Edit language about lipid database

microbiomedata · Dec 12, 2024 · 484a6b9 · 484a6b9
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diff --git a/docs/README_LCMS_LIPID.md b/docs/README_LCMS_LIPID.md
@@ -54,11 +54,10 @@ with the required workflow dependencies.*
 
 ### Database
 
--   PNNL Metabolomics LC-MS *in silico* Spectral Database
-    (<https://metabref.emsl.pnnl.gov/>)
+-   PNNL Metabref Database (<https://metabref.emsl.pnnl.gov/>)
 
-The in-silico lipid spectra in the database are generated from the
-LipidBlast database (v68), found at
+The in-silico lipid spectra in PNNL\'s Metaref database are generated
+from the LipidBlast database (v68), found at
 <https://systemsomicslab.github.io/compms/msdial/main.html>. Note that
 there is no retention time in the PNNL version of the database and the
 workflow does not use retention time scoring.

diff --git a/docs/index_lipid.html b/docs/index_lipid.html
@@ -44,11 +44,11 @@ <h3 id="software-requirements">Software Requirements</h3>
 docker with the required workflow dependencies.</em></p>
 <h3 id="database">Database</h3>
 <ul>
-<li>PNNL Metabolomics LC-MS <em>in silico</em> Spectral Database (<a
+<li>PNNL Metabref Database (<a
 href="https://metabref.emsl.pnnl.gov/">https://metabref.emsl.pnnl.gov/</a>)</li>
 </ul>
-<p>The in-silico lipid spectra in the database are generated from the
-LipidBlast database (v68), found at <a
+<p>The in-silico lipid spectra in PNNL's Metaref database are generated
+from the LipidBlast database (v68), found at <a
 href="https://systemsomicslab.github.io/compms/msdial/main.html">https://systemsomicslab.github.io/compms/msdial/main.html</a>.
 Note that there is no retention time in the PNNL version of the database
 and the workflow does not use retention time scoring.</p>

diff --git a/docs/index_lipid.rst b/docs/index_lipid.rst
@@ -56,10 +56,10 @@ Software Requirements
 Database
 ~~~~~~~~
 
--  PNNL Metabolomics LC-MS *in silico* Spectral Database
+-  PNNL Metabref Database
    (https://metabref.emsl.pnnl.gov/)
 
-The in-silico lipid spectra in the database are generated from the LipidBlast database (v68), found at https://systemsomicslab.github.io/compms/msdial/main.html.
+The in-silico lipid spectra in PNNL's Metaref database are generated from the LipidBlast database (v68), found at https://systemsomicslab.github.io/compms/msdial/main.html.
 Note that there is no retention time in the PNNL version of the database and the workflow does not use retention time scoring.
 
 Sample datasets