End-to-end workflows

This contains a prototype for running end-to-end workflows for the metaG workflow.

Preperation

Run the following steps.

make prep
make zip

Subworkflows

This workflow integrates workflows from the following repos:

https://github.com/microbiomedata/ReadbasedAnalysis https://github.com/microbiomedata/ReadsQC https://github.com/microbiomedata/metaAssembly https://github.com/microbiomedata/metaMAGs https://github.com/microbiomedata/mg_annotation