Move current NMDC documentation into new home directory

microbiomedata · Dec 13, 2024 · b476473 · b476473
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commit b476473
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Showing 198 changed files with 20 additions and 18 deletions.
diff --git a/.docker/dev.nginx.conf b/.docker/dev.nginx.conf
@@ -38,9 +38,9 @@ http {
             rewrite ^ $scheme://$http_host/workflows/ redirect;
         }
 
-        # Current NMDC documentation.
+        # Home documentation.
         location / {
-            proxy_pass http://nmdc-documentation:8000/;
+            proxy_pass http://home-docs:8000/;
         }
     }
 }
diff --git a/...ws/compile-current-nmdc-documentation.yml → .github/workflows/compile-home-docs.yml b/...ws/compile-current-nmdc-documentation.yml → .github/workflows/compile-home-docs.yml
@@ -1,6 +1,6 @@
 # This GitHub Actions workflow compiles the Sphinx documentation into web-based documentation.
 # Reference: https://docs.github.com/en/actions/writing-workflows/workflow-syntax-for-github-actions
-name: Compile current NMDC documentation into HTML
+name: Compile home documentation into HTML
 
 on:
   push: { branches: [ main ] }
@@ -17,7 +17,7 @@ jobs:
       run:
         # Set a default working directory for all `run` steps in this job.
         # Reference: https://docs.github.com/en/actions/writing-workflows/workflow-syntax-for-github-actions#jobsjob_iddefaultsrun
-        working-directory: content/nmdc
+        working-directory: content/home
     permissions:
       contents: read
     steps:
@@ -31,14 +31,14 @@ jobs:
       - name: Install other dependencies
         run: pip install -r requirements.txt
       - name: Compile source documents into HTML
-        run: sphinx-build -b html src ${{ github.workspace }}/content/nmdc/_build/html
+        run: sphinx-build -b html src ${{ github.workspace }}/content/home/_build/html
         # Upload the result as an "artifact" so it can then be downloaded and used by another job.
       - name: Save the HTML for publishing later  # Docs: https://github.com/actions/upload-artifact
         uses: actions/upload-artifact@v4
         with:
-          name: current-nmdc-documentation-as-html
+          name: current-home-documentation-as-html
           # Note: Relative `path` values here are relative to the _workspace_, not to the current working directory.
           #       Reference: https://github.com/actions/upload-artifact/pull/477#issue-2044900649
-          path: content/nmdc/_build/html
+          path: content/home/_build/html
           if-no-files-found: error
           retention-days: 1  # Note: 1 day is the shortest period possible
diff --git a/.github/workflows/deploy-to-gh-pages.yml b/.github/workflows/deploy-to-gh-pages.yml
@@ -17,9 +17,9 @@ jobs:
   compile-legacy-nmdc-documentation:
     name: Compile legacy NMDC documentation
     uses: ./.github/workflows/compile-legacy-nmdc-documentation.yml
-  compile-current-nmdc-documentation:
-    name: Compile current NMDC documentation
-    uses: ./.github/workflows/compile-current-nmdc-documentation.yml
+  compile-home-docs:
+    name: Compile home documentation
+    uses: ./.github/workflows/compile-home-docs.yml
   fetch-and-compile-nmdc-runtime-documentation:
     name: Fetch and compile NMDC Runtime documentation
     uses: ./.github/workflows/fetch-and-compile-nmdc-runtime-documentation.yml
@@ -33,7 +33,7 @@ jobs:
     # Reference: https://docs.github.com/en/actions/writing-workflows/workflow-syntax-for-github-actions#jobsjob_idneeds
     needs:
       - compile-legacy-nmdc-documentation
-      - compile-current-nmdc-documentation
+      - compile-home-docs
       - fetch-and-compile-nmdc-runtime-documentation
       - fetch-and-compile-workflow-documentation
     runs-on: ubuntu-latest
@@ -56,7 +56,7 @@ jobs:
             _build/html/runtime \
             _build/html/workflows
           cp -R -T artifacts/legacy-nmdc-documentation-as-html  _build/html/legacy
-          cp -R -T artifacts/current-nmdc-documentation-as-html _build/html
+          cp -R -T artifacts/home-docs-as-html                  _build/html
           cp -R -T artifacts/nmdc-runtime-documentation-as-html _build/html/runtime
           cp -R -T artifacts/workflow-documentation-as-html     _build/html/workflows
       - name: Inject robots.txt file into assembled website file tree

diff --git a/content/.gitignore b/content/.gitignore
@@ -0,0 +1,2 @@
+# Ignore the web-based documentation generated by Sphinx.
+/_build
diff --git a/content/nmdc/.gitignore → content/home/.gitignore b/content/nmdc/.gitignore → content/home/.gitignore
diff --git a/content/nmdc/Dockerfile → content/home/Dockerfile b/content/nmdc/Dockerfile → content/home/Dockerfile
diff --git a/content/nmdc/requirements.txt → content/home/requirements.txt b/content/nmdc/requirements.txt → content/home/requirements.txt
diff --git a/content/nmdc/src/_static/css/custom.css → content/home/src/_static/css/custom.css b/content/nmdc/src/_static/css/custom.css → content/home/src/_static/css/custom.css
diff --git a/content/nmdc/src/_static/favicon.ico → content/home/src/_static/favicon.ico b/content/nmdc/src/_static/favicon.ico → content/home/src/_static/favicon.ico
diff --git a/...ages/howto_guides/api_gui/find_cursor.png → ...ages/howto_guides/api_gui/find_cursor.png b/...ages/howto_guides/api_gui/find_cursor.png → ...ages/howto_guides/api_gui/find_cursor.png
diff --git a/..._gui/find_data_objects_data_object_id.png → ..._gui/find_data_objects_data_object_id.png b/..._gui/find_data_objects_data_object_id.png → ..._gui/find_data_objects_data_object_id.png
diff --git a/...owto_guides/api_gui/find_example_note.png → ...owto_guides/api_gui/find_example_note.png b/...owto_guides/api_gui/find_example_note.png → ...owto_guides/api_gui/find_example_note.png
diff --git a/...wto_guides/api_gui/find_example_step1.png → ...wto_guides/api_gui/find_example_step1.png b/...wto_guides/api_gui/find_example_step1.png → ...wto_guides/api_gui/find_example_step1.png
diff --git a/...wto_guides/api_gui/find_example_step2.png → ...wto_guides/api_gui/find_example_step2.png b/...wto_guides/api_gui/find_example_step2.png → ...wto_guides/api_gui/find_example_step2.png
diff --git a/...guides/api_gui/find_example_step3and4.png → ...guides/api_gui/find_example_step3and4.png b/...guides/api_gui/find_example_step3and4.png → ...guides/api_gui/find_example_step3and4.png
diff --git a/...wto_guides/api_gui/find_example_step5.png → ...wto_guides/api_gui/find_example_step5.png b/...wto_guides/api_gui/find_example_step5.png → ...wto_guides/api_gui/find_example_step5.png
diff --git a/...to_guides/api_gui/find_get_activities.png → ...to_guides/api_gui/find_get_activities.png b/...to_guides/api_gui/find_get_activities.png → ...to_guides/api_gui/find_get_activities.png
diff --git a/...i_gui/find_get_activities_activity_id.png → ...i_gui/find_get_activities_activity_id.png b/...i_gui/find_get_activities_activity_id.png → ...i_gui/find_get_activities_activity_id.png
diff --git a/...to_guides/api_gui/find_get_biosamples.png → ...to_guides/api_gui/find_get_biosamples.png b/...to_guides/api_gui/find_get_biosamples.png → ...to_guides/api_gui/find_get_biosamples.png
diff --git a/...api_gui/find_get_biosamples_sample_id.png → ...api_gui/find_get_biosamples_sample_id.png b/...api_gui/find_get_biosamples_sample_id.png → ...api_gui/find_get_biosamples_sample_id.png
diff --git a/..._guides/api_gui/find_get_data_objects.png → ..._guides/api_gui/find_get_data_objects.png b/..._guides/api_gui/find_get_data_objects.png → ..._guides/api_gui/find_get_data_objects.png
diff --git a/...s/api_gui/find_get_data_objects_study.png → ...s/api_gui/find_get_data_objects_study.png b/...s/api_gui/find_get_data_objects_study.png → ...s/api_gui/find_get_data_objects_study.png
diff --git a/...howto_guides/api_gui/find_get_studies.png → ...howto_guides/api_gui/find_get_studies.png b/...howto_guides/api_gui/find_get_studies.png → ...howto_guides/api_gui/find_get_studies.png
diff --git a/...des/api_gui/find_get_studies_study_id.png → ...des/api_gui/find_get_studies_study_id.png b/...des/api_gui/find_get_studies_study_id.png → ...des/api_gui/find_get_studies_study_id.png
diff --git a/...guides/api_gui/metadata_example_step1.png → ...guides/api_gui/metadata_example_step1.png b/...guides/api_gui/metadata_example_step1.png → ...guides/api_gui/metadata_example_step1.png
diff --git a/...guides/api_gui/metadata_example_step2.png → ...guides/api_gui/metadata_example_step2.png b/...guides/api_gui/metadata_example_step2.png → ...guides/api_gui/metadata_example_step2.png
diff --git a/...guides/api_gui/metadata_example_step3.png → ...guides/api_gui/metadata_example_step3.png b/...guides/api_gui/metadata_example_step3.png → ...guides/api_gui/metadata_example_step3.png
diff --git a/...es/api_gui/metadata_example_step4and5.png → ...es/api_gui/metadata_example_step4and5.png b/...es/api_gui/metadata_example_step4and5.png → ...es/api_gui/metadata_example_step4and5.png
diff --git a/...guides/api_gui/metadata_example_step6.png → ...guides/api_gui/metadata_example_step6.png b/...guides/api_gui/metadata_example_step6.png → ...guides/api_gui/metadata_example_step6.png
diff --git a/.../api_gui/metadata_get_collection_name.png → .../api_gui/metadata_get_collection_name.png b/.../api_gui/metadata_get_collection_name.png → .../api_gui/metadata_get_collection_name.png
diff --git a/...i/metadata_get_collection_name_doc_id.png → ...i/metadata_get_collection_name_doc_id.png b/...i/metadata_get_collection_name_doc_id.png → ...i/metadata_get_collection_name_doc_id.png
diff --git a/...api_gui/metadata_get_collection_stats.png → ...api_gui/metadata_get_collection_stats.png b/...api_gui/metadata_get_collection_stats.png → ...api_gui/metadata_get_collection_stats.png
diff --git a/...to_guides/api_gui/metadata_get_doc_id.png → ...to_guides/api_gui/metadata_get_doc_id.png b/...to_guides/api_gui/metadata_get_doc_id.png → ...to_guides/api_gui/metadata_get_doc_id.png
diff --git a/...i_gui/metadata_get_nmdcschema_version.png → ...i_gui/metadata_get_nmdcschema_version.png b/...i_gui/metadata_get_nmdcschema_version.png → ...i_gui/metadata_get_nmdcschema_version.png
diff --git a/...des/api_gui/metadata_page_token_param.png → ...des/api_gui/metadata_page_token_param.png b/...des/api_gui/metadata_page_token_param.png → ...des/api_gui/metadata_page_token_param.png
diff --git a/...i/metadata_post_changesheets_validate.png → ...i/metadata_post_changesheets_validate.png b/...i/metadata_post_changesheets_validate.png → ...i/metadata_post_changesheets_validate.png
diff --git a/...s/api_gui/metadata_post_json_validate.png → ...s/api_gui/metadata_post_json_validate.png b/...s/api_gui/metadata_post_json_validate.png → ...s/api_gui/metadata_post_json_validate.png
diff --git a/..._gui/metadata_post_validate_urls_file.png → ..._gui/metadata_post_validate_urls_file.png b/..._gui/metadata_post_validate_urls_file.png → ..._gui/metadata_post_validate_urls_file.png
diff --git a/...s/howto_guides/data_mgt/data_mgt_list.png → ...s/howto_guides/data_mgt/data_mgt_list.png b/...s/howto_guides/data_mgt/data_mgt_list.png → ...s/howto_guides/data_mgt/data_mgt_list.png
diff --git a/...guides/portal_guide/Create_submission.png → ...guides/portal_guide/Create_submission.png b/...guides/portal_guide/Create_submission.png → ...guides/portal_guide/Create_submission.png
diff --git a/.../howto_guides/portal_guide/KO_results.png → .../howto_guides/portal_guide/KO_results.png b/.../howto_guides/portal_guide/KO_results.png → .../howto_guides/portal_guide/KO_results.png
diff --git a/...to_guides/portal_guide/KO_term_search.png → ...to_guides/portal_guide/KO_term_search.png b/...to_guides/portal_guide/KO_term_search.png → ...to_guides/portal_guide/KO_term_search.png
diff --git a/...mages/howto_guides/portal_guide/ORCiD.png → ...mages/howto_guides/portal_guide/ORCiD.png b/...mages/howto_guides/portal_guide/ORCiD.png → ...mages/howto_guides/portal_guide/ORCiD.png
diff --git a/...s/howto_guides/portal_guide/PI_search.png → ...s/howto_guides/portal_guide/PI_search.png b/...s/howto_guides/portal_guide/PI_search.png → ...s/howto_guides/portal_guide/PI_search.png
diff --git a/...es/howto_guides/portal_guide/bar_plot.png → ...es/howto_guides/portal_guide/bar_plot.png b/...es/howto_guides/portal_guide/bar_plot.png → ...es/howto_guides/portal_guide/bar_plot.png
diff --git a/...wto_guides/portal_guide/bulk_download.png → ...wto_guides/portal_guide/bulk_download.png b/...wto_guides/portal_guide/bulk_download.png → ...wto_guides/portal_guide/bulk_download.png
diff --git a/...owto_guides/portal_guide/color_legend.png → ...owto_guides/portal_guide/color_legend.png b/...owto_guides/portal_guide/color_legend.png → ...owto_guides/portal_guide/color_legend.png
diff --git a/...howto_guides/portal_guide/column_help.png → ...howto_guides/portal_guide/column_help.png b/...howto_guides/portal_guide/column_help.png → ...howto_guides/portal_guide/column_help.png
diff --git a/...wto_guides/portal_guide/column_search.png → ...wto_guides/portal_guide/column_search.png b/...wto_guides/portal_guide/column_search.png → ...wto_guides/portal_guide/column_search.png
diff --git a/...guides/portal_guide/column_visibility.png → ...guides/portal_guide/column_visibility.png b/...guides/portal_guide/column_visibility.png → ...guides/portal_guide/column_visibility.png
diff --git a/...images/howto_guides/portal_guide/date.png → ...images/howto_guides/portal_guide/date.png b/...images/howto_guides/portal_guide/date.png → ...images/howto_guides/portal_guide/date.png
diff --git a/...mages/howto_guides/portal_guide/depth.png → ...mages/howto_guides/portal_guide/depth.png b/...mages/howto_guides/portal_guide/depth.png → ...mages/howto_guides/portal_guide/depth.png
diff --git a/...portal_guide/download_individual_file.png → ...portal_guide/download_individual_file.png b/...portal_guide/download_individual_file.png → ...portal_guide/download_individual_file.png
diff --git a/...to_guides/portal_guide/enviro_package.png → ...to_guides/portal_guide/enviro_package.png b/...to_guides/portal_guide/enviro_package.png → ...to_guides/portal_guide/enviro_package.png
diff --git a/...images/howto_guides/portal_guide/envo.png → ...images/howto_guides/portal_guide/envo.png b/...images/howto_guides/portal_guide/envo.png → ...images/howto_guides/portal_guide/envo.png
diff --git a/...to_guides/portal_guide/geographic_map.png → ...to_guides/portal_guide/geographic_map.png b/...to_guides/portal_guide/geographic_map.png → ...to_guides/portal_guide/geographic_map.png
diff --git a/...o_guides/portal_guide/geographic_name.png → ...o_guides/portal_guide/geographic_name.png b/...o_guides/portal_guide/geographic_name.png → ...o_guides/portal_guide/geographic_name.png
diff --git a/...ides/portal_guide/gold_classification.png → ...ides/portal_guide/gold_classification.png b/...ides/portal_guide/gold_classification.png → ...ides/portal_guide/gold_classification.png
diff --git a/...o_guides/portal_guide/instrument_name.png → ...o_guides/portal_guide/instrument_name.png b/...o_guides/portal_guide/instrument_name.png → ...o_guides/portal_guide/instrument_name.png
diff --git a/...to_guides/portal_guide/jump_to_column.png → ...to_guides/portal_guide/jump_to_column.png b/...to_guides/portal_guide/jump_to_column.png → ...to_guides/portal_guide/jump_to_column.png
diff --git a/...es/howto_guides/portal_guide/latitude.png → ...es/howto_guides/portal_guide/latitude.png b/...es/howto_guides/portal_guide/latitude.png → ...es/howto_guides/portal_guide/latitude.png
diff --git a/...s/howto_guides/portal_guide/longitude.png → ...s/howto_guides/portal_guide/longitude.png b/...s/howto_guides/portal_guide/longitude.png → ...s/howto_guides/portal_guide/longitude.png
diff --git a/.../howto_guides/portal_guide/multiomics.png → .../howto_guides/portal_guide/multiomics.png b/.../howto_guides/portal_guide/multiomics.png → .../howto_guides/portal_guide/multiomics.png
diff --git a/.../howto_guides/portal_guide/omics_type.png → .../howto_guides/portal_guide/omics_type.png b/.../howto_guides/portal_guide/omics_type.png → .../howto_guides/portal_guide/omics_type.png
diff --git a/...des/portal_guide/portal_functionality.png → ...des/portal_guide/portal_functionality.png b/...des/portal_guide/portal_functionality.png → ...des/portal_guide/portal_functionality.png
diff --git a/...s/portal_guide/processing_institution.png → ...s/portal_guide/processing_institution.png b/...s/portal_guide/processing_institution.png → ...s/portal_guide/processing_institution.png
diff --git a/...to_guides/portal_guide/sankey_diagram.png → ...to_guides/portal_guide/sankey_diagram.png b/...to_guides/portal_guide/sankey_diagram.png → ...to_guides/portal_guide/sankey_diagram.png
diff --git a/...wto_guides/portal_guide/shipping_info.png → ...wto_guides/portal_guide/shipping_info.png b/...wto_guides/portal_guide/shipping_info.png → ...wto_guides/portal_guide/shipping_info.png
diff --git a/.../howto_guides/portal_guide/study_info.png → .../howto_guides/portal_guide/study_info.png b/.../howto_guides/portal_guide/study_info.png → .../howto_guides/portal_guide/study_info.png
diff --git a/...ortal_guide/sub_portal_enviro_package.png → ...ortal_guide/sub_portal_enviro_package.png b/...ortal_guide/sub_portal_enviro_package.png → ...ortal_guide/sub_portal_enviro_package.png
diff --git a/..._guides/portal_guide/sub_portal_input.png → ..._guides/portal_guide/sub_portal_input.png b/..._guides/portal_guide/sub_portal_input.png → ..._guides/portal_guide/sub_portal_input.png
diff --git a/...uides/portal_guide/submission_context.png → ...uides/portal_guide/submission_context.png b/...uides/portal_guide/submission_context.png → ...uides/portal_guide/submission_context.png
diff --git a/...o_guides/portal_guide/temporal_slider.png → ...o_guides/portal_guide/temporal_slider.png b/...o_guides/portal_guide/temporal_slider.png → ...o_guides/portal_guide/temporal_slider.png
diff --git a/.../howto_guides/portal_guide/upset_plot.png → .../howto_guides/portal_guide/upset_plot.png b/.../howto_guides/portal_guide/upset_plot.png → .../howto_guides/portal_guide/upset_plot.png
diff --git a/...es/howto_guides/portal_guide/validate.png → ...es/howto_guides/portal_guide/validate.png b/...es/howto_guides/portal_guide/validate.png → ...es/howto_guides/portal_guide/validate.png
diff --git a/...es/howto_guides/workflows/MAGs/image1.png → ...es/howto_guides/workflows/MAGs/image1.png b/...es/howto_guides/workflows/MAGs/image1.png → ...es/howto_guides/workflows/MAGs/image1.png
diff --git a/...es/howto_guides/workflows/MAGs/image2.png → ...es/howto_guides/workflows/MAGs/image2.png b/...es/howto_guides/workflows/MAGs/image2.png → ...es/howto_guides/workflows/MAGs/image2.png
diff --git a/...es/howto_guides/workflows/MAGs/image3.png → ...es/howto_guides/workflows/MAGs/image3.png b/...es/howto_guides/workflows/MAGs/image3.png → ...es/howto_guides/workflows/MAGs/image3.png
diff --git a/...es/howto_guides/workflows/MAGs/image4.png → ...es/howto_guides/workflows/MAGs/image4.png b/...es/howto_guides/workflows/MAGs/image4.png → ...es/howto_guides/workflows/MAGs/image4.png
diff --git a/...es/howto_guides/workflows/MAGs/image5.png → ...es/howto_guides/workflows/MAGs/image5.png b/...es/howto_guides/workflows/MAGs/image5.png → ...es/howto_guides/workflows/MAGs/image5.png
diff --git a/...es/howto_guides/workflows/MAGs/image6.png → ...es/howto_guides/workflows/MAGs/image6.png b/...es/howto_guides/workflows/MAGs/image6.png → ...es/howto_guides/workflows/MAGs/image6.png
diff --git a/...es/howto_guides/workflows/MAGs/image7.png → ...es/howto_guides/workflows/MAGs/image7.png b/...es/howto_guides/workflows/MAGs/image7.png → ...es/howto_guides/workflows/MAGs/image7.png
diff --git a/...ges/howto_guides/workflows/NOM/image1.png → ...ges/howto_guides/workflows/NOM/image1.png b/...ges/howto_guides/workflows/NOM/image1.png → ...ges/howto_guides/workflows/NOM/image1.png
diff --git a/...ges/howto_guides/workflows/NOM/image2.png → ...ges/howto_guides/workflows/NOM/image2.png b/...ges/howto_guides/workflows/NOM/image2.png → ...ges/howto_guides/workflows/NOM/image2.png
diff --git a/...ges/howto_guides/workflows/NOM/image3.png → ...ges/howto_guides/workflows/NOM/image3.png b/...ges/howto_guides/workflows/NOM/image3.png → ...ges/howto_guides/workflows/NOM/image3.png
diff --git a/...ges/howto_guides/workflows/NOM/image4.png → ...ges/howto_guides/workflows/NOM/image4.png b/...ges/howto_guides/workflows/NOM/image4.png → ...ges/howto_guides/workflows/NOM/image4.png
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diff --git a/...rkflows/6_Metabolomics_metamsworkflow.png → ...rkflows/6_Metabolomics_metamsworkflow.png b/...rkflows/6_Metabolomics_metamsworkflow.png → ...rkflows/6_Metabolomics_metamsworkflow.png
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diff --git a/...rkflows/7_Metabolomics_metamsworkflow.png → ...rkflows/7_Metabolomics_metamsworkflow.png b/...rkflows/7_Metabolomics_metamsworkflow.png → ...rkflows/7_Metabolomics_metamsworkflow.png
diff --git a/...aproteomics_detailed_workflow_diagram.png → ...aproteomics_detailed_workflow_diagram.png b/...aproteomics_detailed_workflow_diagram.png → ...aproteomics_detailed_workflow_diagram.png
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diff --git a/...rkflows/8_Metabolomics_metamsworkflow.png → ...rkflows/8_Metabolomics_metamsworkflow.png b/...rkflows/8_Metabolomics_metamsworkflow.png → ...rkflows/8_Metabolomics_metamsworkflow.png
diff --git a/.../9_MetaT_Workflow_metatranscriptomics.png → .../9_MetaT_Workflow_metatranscriptomics.png b/.../9_MetaT_Workflow_metatranscriptomics.png → .../9_MetaT_Workflow_metatranscriptomics.png
diff --git a/...ence/workflows/9_NOM_enviromsworkflow.png → ...ence/workflows/9_NOM_enviromsworkflow.png b/...ence/workflows/9_NOM_enviromsworkflow.png → ...ence/workflows/9_NOM_enviromsworkflow.png
diff --git a/content/nmdc/src/_static/js/index.js → content/home/src/_static/js/index.js b/content/nmdc/src/_static/js/index.js → content/home/src/_static/js/index.js
diff --git a/.../src/_templates/breadcrumbs.html.disabled → .../src/_templates/breadcrumbs.html.disabled b/.../src/_templates/breadcrumbs.html.disabled → .../src/_templates/breadcrumbs.html.disabled
diff --git a/content/nmdc/src/conf.py → content/home/src/conf.py b/content/nmdc/src/conf.py → content/home/src/conf.py
@@ -103,5 +103,5 @@
     "github_user": "microbiomedata",
     "github_repo": "docs",
     "github_version": "main",
-    "conf_py_path": "/content/nmdc/src/",  # path to directory containing `conf.py` file
+    "conf_py_path": "/content/home/src/",  # path to directory containing `conf.py` file
 }
diff --git a/...rc/explanation/community_conversations.md → ...rc/explanation/community_conversations.md b/...rc/explanation/community_conversations.md → ...rc/explanation/community_conversations.md
diff --git a/content/nmdc/src/explanation/fair_data.md → content/home/src/explanation/fair_data.md b/content/nmdc/src/explanation/fair_data.md → content/home/src/explanation/fair_data.md
diff --git a/content/nmdc/src/explanation/publications.md → content/home/src/explanation/publications.md b/content/nmdc/src/explanation/publications.md → content/home/src/explanation/publications.md
diff --git a/content/nmdc/src/howto_guides/api_gui.md → content/home/src/howto_guides/api_gui.md b/content/nmdc/src/howto_guides/api_gui.md → content/home/src/howto_guides/api_gui.md
diff --git a/content/nmdc/src/howto_guides/data_plan.md → content/home/src/howto_guides/data_plan.md b/content/nmdc/src/howto_guides/data_plan.md → content/home/src/howto_guides/data_plan.md
diff --git a/content/nmdc/src/howto_guides/globus.md → content/home/src/howto_guides/globus.md b/content/nmdc/src/howto_guides/globus.md → content/home/src/howto_guides/globus.md
diff --git a/...ent/nmdc/src/howto_guides/portal_guide.md → ...ent/home/src/howto_guides/portal_guide.md b/...ent/nmdc/src/howto_guides/portal_guide.md → ...ent/home/src/howto_guides/portal_guide.md
diff --git a/...nt/nmdc/src/howto_guides/run_workflows.md → ...nt/home/src/howto_guides/run_workflows.md b/...nt/nmdc/src/howto_guides/run_workflows.md → ...nt/home/src/howto_guides/run_workflows.md
diff --git a/content/nmdc/src/howto_guides/submit2nmdc.md → content/home/src/howto_guides/submit2nmdc.md b/content/nmdc/src/howto_guides/submit2nmdc.md → content/home/src/howto_guides/submit2nmdc.md
diff --git a/content/nmdc/src/index.rst → content/home/src/index.rst b/content/nmdc/src/index.rst → content/home/src/index.rst
diff --git a/content/nmdc/src/overview/nmdc_overview.rst → content/home/src/overview/nmdc_overview.rst b/content/nmdc/src/overview/nmdc_overview.rst → content/home/src/overview/nmdc_overview.rst
diff --git a/.../src/reference/combined_workflow_docs.rst → .../src/reference/combined_workflow_docs.rst b/.../src/reference/combined_workflow_docs.rst → .../src/reference/combined_workflow_docs.rst
diff --git a/content/nmdc/src/reference/data_portal.md → content/home/src/reference/data_portal.md b/content/nmdc/src/reference/data_portal.md → content/home/src/reference/data_portal.md
diff --git a/...ent/nmdc/src/tutorials/nav_data_portal.md → ...ent/home/src/tutorials/nav_data_portal.md b/...ent/nmdc/src/tutorials/nav_data_portal.md → ...ent/home/src/tutorials/nav_data_portal.md
diff --git a/...nt/nmdc/src/tutorials/prepare_metadata.md → ...nt/home/src/tutorials/prepare_metadata.md b/...nt/nmdc/src/tutorials/prepare_metadata.md → ...nt/home/src/tutorials/prepare_metadata.md
diff --git a/content/nmdc/src/tutorials/run_workflows.md → content/home/src/tutorials/run_workflows.md b/content/nmdc/src/tutorials/run_workflows.md → content/home/src/tutorials/run_workflows.md
diff --git a/...t/nmdc/src/tutorials/submission_portal.md → ...t/home/src/tutorials/submission_portal.md b/...t/nmdc/src/tutorials/submission_portal.md → ...t/home/src/tutorials/submission_portal.md
diff --git a/content/nmdc/src/workflows.rst → content/home/src/workflows.rst b/content/nmdc/src/workflows.rst → content/home/src/workflows.rst
diff --git a/docker-compose.yml b/docker-compose.yml
@@ -9,15 +9,15 @@ services:
     volumes:
       - ./legacy/nmdc-documentation/src:/app/src
 
-  nmdc-documentation:
-    # Use the container image built from `content/nmdc/Dockerfile`.
+  home-docs:
+    # Use the container image built from `content/home/Dockerfile`.
     build:
-      context: content/nmdc
+      context: content/home
       dockerfile: Dockerfile
     ports:
       - "5002:8000"
     volumes:
-      - ./content/nmdc/src:/app/src
+      - ./content/home/src:/app/src
 
   runtime-documentation:
     # Use the container image built from `pullers/runtime_docs/Dockerfile`.
@@ -40,7 +40,7 @@ services:
     restart: unless-stopped
     depends_on:
       - legacy-nmdc-documentation
-      - nmdc-documentation
+      - home-docs
       - runtime-documentation
       - workflow-documentation
     ports:
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1,2 @@
		# Ignore the web-based documentation generated by Sphinx.
		/_build