updated gottcha2 path to use the correct database version

microbiomedata · Jun 18, 2024 · 9ebcf4a · 9ebcf4a
1 parent 1214712
commit 9ebcf4a
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/ReadbasedAnalysis.wdl b/ReadbasedAnalysis.wdl
@@ -4,7 +4,7 @@ workflow ReadbasedAnalysis {
     Boolean enabled_tools_gottcha2 = true
     Boolean enabled_tools_kraken2 = true
     Boolean enabled_tools_centrifuge = true
-    String db_gottcha2 = "/refdata/gottcha2/RefSeq-r90/gottcha_db.BAVFPt.species.fna"
+    String db_gottcha2 = "/refdata/gottcha2/RefSeq-r223/gottcha_db.BAVFPt.species.fna"
     String db_kraken2 = "/refdata/kraken2/"
     String db_centrifuge = "/refdata/centrifuge/p_compressed"
     Int cpu = 8