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install utils and ps with apt
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farchaab committed Aug 28, 2024
1 parent 0626525 commit be970e8
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10 changes: 9 additions & 1 deletion Dockerfile
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Expand Up @@ -3,7 +3,15 @@ LABEL org.opencontainers.image.source=https://github.com/metagenlab/assembly_fin
LABEL org.opencontainers.image.description="Snakemake-powered cli to download genomes with NCBI datasets"
LABEL org.opencontainers.image.licenses=MIT
ENV LANG=C.UTF-8
ENV SHELL=/bin/bash
ENV SHELL=/bin/bash

USER root
ENV APT_PKGS="curl rsync p7zip-full procps"
RUN apt-get update \
&& apt-get install -y --no-install-recommends ${APT_PKGS} \
&& apt-get clean \
&& rm -rf /var/lib/apt /var/lib/dpkg /var/lib/cache /var/lib/log
USER $MAMBA_USER

COPY --chown=$MAMBA_USER:$MAMBA_USER . /pkg
RUN micromamba config set extract_threads 1 && \
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