removed ccs_sam_to_bam log

metagenlab · Oct 29, 2024 · fbf1b90 · fbf1b90
1 parent 926e002
commit fbf1b90
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/mess/workflow/rules/processing/reads.smk b/mess/workflow/rules/processing/reads.smk
@@ -41,7 +41,7 @@ if PASSES > 1:
         shell:
             """
             samtools view -@ {threads} -Sb {input} | \\
-            samtools sort -@ {threads} -o {output} 2> {log}
+            samtools sort -@ {threads} -o {output}
             """
 
     rule ccs_bam_to_fastq: