Merge pull request #30 from metagenlab/hmp-template

Add accessions for hmp-template
metagenlab · Oct 11, 2024 · 1514b00 · 1514b00
2 parents 82dc0f2 + 72dfab8
commit 1514b00
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Showing 23 changed files with 4,724 additions and 4,906 deletions.
diff --git a/mess/__main__.py b/mess/__main__.py
@@ -460,12 +460,13 @@ def test(**kwargs):
 def hmp_template(site, sample, **kwargs):
     """Download and simulate healthy human microbiome templates"""
     # Config to add or update in configfile
-    if sample == None:
+    if sample is None:
         kwargs["input"] = snake_base(os.path.join("data", "hmp_templates", site))
     else:
         kwargs["input"] = snake_base(
             os.path.join("data", "hmp_templates", site, f"{sample}.tsv")
         )
+    kwargs["taxon"] = False
     merge_config = {"args": kwargs}
     run_snakemake(
         # Full path to Snakefile