Animated latent space #137
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mattersoflight
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Aug 17, 2024
* slice by FOV and track * proper indexing Co-authored-by: Ziwen Liu <[email protected]> * plot features of a single track * rename (dataset -> embedding_dataset) * trying to read patches of a track * display cells from the chosen track in napari * project a track on umap computed from all features * Animated latent space (#137) * animated latent space * delete duplicate umap calculation --------- Co-authored-by: Shalin Mehta <[email protected]> * PCA of features and projections --------- Co-authored-by: Ziwen Liu <[email protected]>
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Add animation to the interactive scatter plot to show tracks moving in latent space.