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proposed1444 | BA.2.75/BQ.1 #216

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ktmeaton opened this issue Dec 19, 2022 · 0 comments
Closed
1 task done

proposed1444 | BA.2.75/BQ.1 #216

ktmeaton opened this issue Dec 19, 2022 · 0 comments
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validation
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v0.7.0

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ktmeaton commented Dec 19, 2022 •
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  • pango-designation issue: #1444
  • covSPECTRUM query: TBD

Parents

Clade: Omicron/BA.2.75/22D,Omicron/BA.5/22B
Lineage: CH.1.1*,BQ.1.1*
Lineage Confidence: 0.725,0.494

Immunity

RBD Level: 6
RBD Substitutions: S:R346T,S:K444T,S:L452R,S:N460K,S:F486V,S:R493Q
Immune Escape: 0.8392
ACE2 Binding: 0.7483

Immune Escape Ranking

Higher values indicate an increased capacity to evade antibodies.

TBD

ACE2 Binding Ranking

Higher values indicate an increased capacity for viral entry into the host cell.

TBD

Alleles

proposed1444 is successfully detected with the sc2rf mode for XBB

image

Breakpoints

Breakpoint 1: 22600:22628

breakpoints_clade

Tasks

  • resources/breakpoints.tsv Updated
@ktmeaton ktmeaton self-assigned this Jan 24, 2023
@ktmeaton ktmeaton moved this to In Progress in ncov-recombinant Jan 24, 2023
@ktmeaton ktmeaton added this to the v0.7.0 milestone Jan 24, 2023
@ktmeaton ktmeaton moved this from In Progress to Done in ncov-recombinant Jan 24, 2023
This was referenced Feb 22, 2023
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validation
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ncov-recombinant
Status: Done
Milestone
v0.7.0
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@ktmeaton