Vardict update (bioconda#15721)

* Update vardict and vardict-java to v1.6. * Add me as maintainer for vardict-java and vardict * Build vardict with noarch: generic. * Fix unrelated linting errors and the LICENSE warning.
kpalin · Aug 7, 2019 · 4103e1c · 4103e1c
1 parent de1a4c8
commit 4103e1c
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Showing 6 changed files with 20 additions and 12 deletions.
diff --git a/recipes/hyphy/meta.yaml b/recipes/hyphy/meta.yaml
@@ -10,7 +10,7 @@ source:
   sha256: '{{ sha256 }}'
 
 build:
-  number: 0
+  number: 1
 
 requirements:
   build:

diff --git a/recipes/msstitch/meta.yaml b/recipes/msstitch/meta.yaml
@@ -8,7 +8,7 @@ source:
 
 build:
   noarch: python
-  number: 0
+  number: 1
   entry_points:
     - msspercolator=app.pycolator:main
     - msslookup=app.mslookup:main

diff --git a/recipes/peptide-shaker/meta.yaml b/recipes/peptide-shaker/meta.yaml
@@ -20,7 +20,7 @@ package:
 
 build:
   noarch: generic
-  number: 0
+  number: 1
 
 source:
   url: http://genesis.ugent.be/maven2/eu/isas/peptideshaker/{{ name }}/{{ version }}/{{ name }}-{{ version }}.zip

diff --git a/recipes/perl-cgi/meta.yaml b/recipes/perl-cgi/meta.yaml
@@ -7,7 +7,7 @@ source:
   sha256: 12435fb7ebd3585c47b6d60ee4f5c7d6a7c114a2827d2b5acf3d62aa9fcf1208
 
 build:
-  number: 0
+  number: 1
 
 requirements:
   build:
@@ -49,4 +49,5 @@ test:
 about:
   home: https://metacpan.org/pod/distribution/CGI/lib/CGI.pod
   license: GPL
+  license_file: LICENSE
   summary: A generic file fetching mechanism
diff --git a/recipes/vardict-java/meta.yaml b/recipes/vardict-java/meta.yaml
@@ -1,15 +1,15 @@
-{% set version = "1.5.8" %}
+{% set version = "1.6.0" %}
 
 package:
   name: vardict-java
   version: {{ version }}
 
 source:
-  url: https://github.com/AstraZeneca-NGS/VarDictJava/releases/download/v{{ version }}/VarDict-{{ version }}.zip
-  sha256: 36a177b06114ea939d24f7037b6e339b58e572763736a589232f0ced3731735b
+  url: https://github.com/AstraZeneca-NGS/VarDictJava/releases/download/v1.6/VarDict-{{ version }}.zip
+  sha256: 6bccc7acf5f5515d76daacfd5a29703be3b3dae1c533fd0fd0821cc7fbf26ea4
 
 build:
-  number: 1
+  number: 0
   noarch: generic
 
 requirements:
@@ -27,3 +27,6 @@ about:
   home: https://github.com/AstraZeneca-NGS/VarDictJava
   license: MIT
   summary: Java port of the VarDict variant discovery program
+extra:
+  recipe-maintainers:
+    - roryk
diff --git a/recipes/vardict/meta.yaml b/recipes/vardict/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2018.10.18" %}
-{% set revision = "780af2c" %}
-{% set sha256 = "d2777b461c7566fed326a45d4d6df70367426e438787d8b194318ed7d48fcfcf" %}
+{% set version = "2019.06.04" %}
+{% set revision = "bd6f330" %}
+{% set sha256 = "72b1e1039aeead651161bfa47863bfa884a4237dc80cc8e0c0d67499cc039d1d" %}
 
 package:
   name: vardict
@@ -12,7 +12,8 @@ source:
   sha256: '{{sha256}}'
 
 build:
-  number: 1
+  number: 0
+  noarch: generic
 
 requirements:
   host:
@@ -31,3 +32,6 @@ about:
   license: MIT
   license_family: MIT
   summary: A sensitive variant caller for both single and paired sample variant calling
+extra:
+  recipe-maintainers:
+    - roryk