Integrate Dynamic Settings

.gitattributes

@@ -1,3 +1,6 @@
-*.png -text
 * text eol=lf
+*.png binary
+*.pth* binary
+*.ico binary
+*.nii.gz binary
 

miqa/core/admin.py

@@ -2,7 +2,7 @@
 from django.contrib import admin
 from guardian.admin import GuardedModelAdmin
 
-from .models import Evaluation, Experiment, Frame, Project, Scan, ScanDecision
+from .models import Evaluation, Experiment, Frame, Project, Scan, ScanDecision, Setting
 
 
 @admin.register(Experiment)
@@ -52,3 +52,10 @@ class ProjectAdmin(GuardedModelAdmin):
     )
     list_filter = ('created', 'modified', 'creator')
     search_fields = ('name',)
+
+
+@admin.register(Setting)
+class SettingAdmin(admin.ModelAdmin):
+    list_display = ('key', 'value', 'type', 'group', 'is_type')
+    list_filter = ('type', 'group', 'is_type')
+    list_editable = ('type', 'group', 'is_type')

miqa/core/migrations/0023_user_identified_artifacts.py

@@ -2,8 +2,6 @@
 
 from django.db import migrations, models
 
-import miqa.core.models.scan_decision
-
 
 class Migration(migrations.Migration):
     dependencies = [
@@ -14,8 +12,6 @@ class Migration(migrations.Migration):
         migrations.AddField(
             model_name='scandecision',
             name='user_identified_artifacts',
-            field=models.JSONField(
-                default=miqa.core.models.scan_decision.default_identified_artifacts
-            ),
+            field=models.JSONField(default=dict),
         ),
     ]

miqa/core/migrations/0036_add_setting_alter_project.py

@@ -0,0 +1,141 @@
+# Generated by Django 3.2.16 on 2023-01-19 19:41
+
+import uuid
+
+from django.db import migrations, models
+import django.db.models.deletion
+
+
+class Migration(migrations.Migration):
+    replaces = [
+        ('core', '0036_setting_settingsgroup'),
+        ('core', '0037_project_artifact_group'),
+        ('core', '0038_project_model_mapping_group'),
+        ('core', '0039_auto_20221207_2028'),
+        ('core', '0040_auto_20221207_2037'),
+        ('core', '0041_auto_20221208_1429'),
+        ('core', '0042_auto_20230110_1852'),
+        ('core', '0043_alter_setting_group'),
+        ('core', '0044_alter_project_artifact_group'),
+        ('core', '0045_auto_20230110_2004'),
+        ('core', '0046_alter_setting_group'),
+        ('core', '0047_alter_setting_type'),
+        ('core', '0048_auto_20230113_1751'),
+        ('core', '0049_alter_project_models_group'),
+        ('core', '0050_delete_settingsgroup'),
+        ('core', '0051_alter_setting_type'),
+        ('core', '0052_alter_setting_type'),
+        ('core', '0053_auto_20230119_1815'),
+        ('core', '0054_auto_20230119_1938'),
+    ]
+
+    dependencies = [
+        ('core', '0035_allow_null_decision_creation_times'),
+    ]
+
+    operations = [
+        migrations.CreateModel(
+            name='Setting',
+            fields=[
+                (
+                    'id',
+                    models.UUIDField(
+                        default=uuid.uuid4, editable=False, primary_key=True, serialize=False
+                    ),
+                ),
+                ('key', models.CharField(max_length=255)),
+                ('value', models.TextField(blank=True)),
+                ('is_type', models.BooleanField(blank=True, default=False)),
+                (
+                    'group',
+                    models.ForeignKey(
+                        blank=True,
+                        limit_choices_to=models.Q(
+                            ('type__in', ['GST', 'GAOT', 'GAT', 'GDCT', 'GEFMMT', 'GEMPT', 'GEMT'])
+                        ),
+                        null=True,
+                        on_delete=django.db.models.deletion.SET_NULL,
+                        related_name='setting_group',
+                        to='core.setting',
+                    ),
+                ),
+                (
+                    'type',
+                    models.CharField(
+                        choices=[
+                            ('AOT', 'Anatomy Orientation'),
+                            ('AT', 'Artifact'),
+                            ('DCT', 'Decision Choice'),
+                            ('EFMMT', 'Evaluation File to Model Mapping'),
+                            ('EMPT', 'Evaluation Model Prediction'),
+                            ('EMT', 'Evaluation Model'),
+                            ('ST', 'Scan'),
+                            ('GIP', 'Global Import Path'),
+                            ('GEP', 'Global Export Path'),
+                            ('NS', 'Not Set'),
+                            ('GAOT', 'Group of Anatomy Orientations'),
+                            ('GAT', 'Group of Artifacts'),
+                            ('GDCT', 'Group of Decision Choices'),
+                            ('GEFMMT', 'Group of Evaluation File to Model Mappings'),
+                            ('GEMPT', 'Group of Evaluation Model Predictions'),
+                            ('GEMT', 'Group of Evaluation Models'),
+                            ('GST', 'Group of Scans'),
+                        ],
+                        default='NS',
+                        max_length=20,
+                    ),
+                ),
+            ],
+            options={
+                'ordering': ('key',),
+            },
+        ),
+        migrations.AddField(
+            model_name='project',
+            name='artifacts_group',
+            field=models.ForeignKey(
+                blank=True,
+                limit_choices_to={'type': 'GAT'},
+                null=True,
+                on_delete=django.db.models.deletion.SET_NULL,
+                related_name='artifacts_group',
+                to='core.setting',
+            ),
+        ),
+        migrations.AddField(
+            model_name='project',
+            name='files_to_models_group',
+            field=models.ForeignKey(
+                blank=True,
+                limit_choices_to={'type': 'GEFMMT'},
+                null=True,
+                on_delete=django.db.models.deletion.SET_NULL,
+                related_name='files_to_models_group',
+                to='core.setting',
+            ),
+        ),
+        migrations.AddField(
+            model_name='project',
+            name='models_group',
+            field=models.ForeignKey(
+                blank=True,
+                limit_choices_to={'type': 'GEMT'},
+                null=True,
+                on_delete=django.db.models.deletion.SET_NULL,
+                related_name='models_group',
+                to='core.setting',
+            ),
+        ),
+        migrations.AddField(
+            model_name='project',
+            name='predictions_group',
+            field=models.ForeignKey(
+                blank=True,
+                limit_choices_to={'type': 'GEMPT'},
+                null=True,
+                on_delete=django.db.models.deletion.SET_NULL,
+                related_name='predictions_group',
+                to='core.setting',
+            ),
+        ),
+    ]

miqa/core/models/__init__.py

@@ -5,6 +5,7 @@
 from .project import Project
 from .scan import Scan
 from .scan_decision import ScanDecision
+from .setting import Setting
 
 __all__ = [
     'Evaluation',
@@ -14,4 +15,5 @@
     'Project',
     'Scan',
     'ScanDecision',
+    'Setting',
 ]

miqa/core/models/project.py

@@ -9,7 +9,8 @@
 from guardian.shortcuts import assign_perm, get_perms, get_users_with_perms, remove_perm
 
 from miqa.core.models.scan import SCAN_TYPES, Scan
-from miqa.core.models.scan_decision import ScanDecision
+from miqa.core.models.scan_decision import ArtifactState, ScanDecision
+from miqa.core.models.setting import Setting
 
 
 def default_evaluation_model_mapping():
@@ -54,6 +55,87 @@ class Project(TimeStampedModel, models.Model):
     )
     evaluation_models = models.JSONField(default=default_evaluation_model_mapping)
     default_email_recipients = models.TextField(blank=True)
+    artifacts_group = models.ForeignKey(
+        'Setting',
+        null=True,
+        blank=True,
+        on_delete=models.SET_NULL,
+        related_name='artifacts_group',
+        limit_choices_to={'type': 'GAT'},
+    )
+    files_to_models_group = models.ForeignKey(
+        'Setting',
+        null=True,
+        blank=True,
+        on_delete=models.SET_NULL,
+        related_name='files_to_models_group',
+        limit_choices_to={'type': 'GEFMMT'},
+    )
+    models_group = models.ForeignKey(
+        'Setting',
+        null=True,
+        blank=True,
+        on_delete=models.SET_NULL,
+        related_name='models_group',
+        limit_choices_to={'type': 'GEMT'},
+    )
+    predictions_group = models.ForeignKey(
+        'Setting',
+        null=True,
+        blank=True,
+        on_delete=models.SET_NULL,
+        related_name='predictions_group',
+        limit_choices_to={'type': 'GEMPT'},
+    )
+
+    @property
+    def artifacts(self) -> dict:
+        """Gets the list of artifacts associated with the project."""
+        if self.artifacts_group:
+            artifacts = Setting.objects.filter(group__id=self.artifacts_group_id)
+
+            return {artifact_name.key: ArtifactState.UNDEFINED.value for artifact_name in artifacts}
+        else:
+            return {}
+
+    @property
+    def model_source_type_mappings(self) -> dict:
+        """Gets the list of file type to model mappings associated with the project."""
+        if self.files_to_models_group:
+            model_source_type_mappings = Setting.objects.filter(
+                group__id=self.files_to_models_group_id
+            )
+            this_model_source_type_mapping = {
+                model_source_type_mapping.key: model_source_type_mapping.value
+                for model_source_type_mapping in model_source_type_mappings
+            }
+            return this_model_source_type_mapping
+        else:
+            return {}
+
+    @property
+    def model_mappings(self) -> dict:
+        """Gets the list of models associated with the project."""
+        if self.models_group:
+            model_mappings = Setting.objects.filter(group__id=self.models_group_id)
+            this_model_mapping = {
+                model_mapping.key: model_mapping.value for model_mapping in model_mappings
+            }
+            return this_model_mapping
+        else:
+            return {}
+
+    @property
+    def model_predictions(self) -> dict:
+        """Gets the list of predictions associated with the project."""
+        if self.predictions_group:
+            prediction_mappings = Setting.objects.filter(group__id=self.predictions_group_id)
+            this_prediction_mapping = {}
+            for prediction in prediction_mappings:
+                this_prediction_mapping.setdefault(prediction.key, []).append(prediction.value)
+            return this_prediction_mapping
+        else:
+            return {}
 
     def __str__(self):
         return self.name

miqa/core/models/scan_decision.py

@@ -11,19 +11,6 @@
 if TYPE_CHECKING:
     from miqa.core.models import Experiment
 
-artifacts = [
-    'normal_variants',
-    'lesions',
-    'full_brain_coverage',
-    'misalignment',
-    'swap_wraparound',
-    'ghosting_motion',
-    'inhomogeneity',
-    'susceptibility_metal',
-    'flow_artifact',
-    'truncation_artifact',
-]
-
 DECISION_CHOICES = [
     ('U', 'Usable'),
     ('UE', 'Usable-Extra'),
@@ -38,16 +25,6 @@ class ArtifactState(Enum):
     UNDEFINED = -1
 
 
-def default_identified_artifacts():
-    return {
-        (
-            artifact_name if artifact_name != 'full_brain_coverage' else 'partial_brain_coverage'
-        ): ArtifactState.UNDEFINED.value
-        for artifact_name in artifacts
-        if artifact_name != 'normal_variants'
-    }
-
-
 class ScanDecision(models.Model):
     class Meta:
         ordering = ['-created']
@@ -61,7 +38,7 @@ class Meta:
     creator = models.ForeignKey(User, on_delete=models.PROTECT, null=True, blank=True)
     decision = models.CharField(max_length=2, choices=DECISION_CHOICES, blank=False)
     note = models.TextField(max_length=3000, blank=True)
-    user_identified_artifacts = models.JSONField(default=default_identified_artifacts)
+    user_identified_artifacts = models.JSONField(default=dict)
     location = models.JSONField(default=dict)
 
     @property