bug fixes to branch #331
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bug fixes to branch #331
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* fix for using T1T2w model run_inference was only accepting a single input image, this makes it accept a list of images too, and makes it so --force-nnunet-model T1T2w grabs both T1w and T2w as inputs. * hipp curvature was being used always, instead of wildcard this didn't affect any workflow computations, just the subsequent dscalar.nii and spec file that would have the wrong curvature map * fix logical error * Bump version to 1.5.2-pre.1 * Bump version to 1.5.2-pre.2 * keep pipeline_description changes --------- Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
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Dec 17, 2024
* removed segT*w * cropseg to manualseg * Port v1.5.2 bugfixes into dev-v2.0.0 (#329) (#331) * fix for using T1T2w model run_inference was only accepting a single input image, this makes it accept a list of images too, and makes it so --force-nnunet-model T1T2w grabs both T1w and T2w as inputs. * hipp curvature was being used always, instead of wildcard this didn't affect any workflow computations, just the subsequent dscalar.nii and spec file that would have the wrong curvature map * fix logical error * Bump version to 1.5.2-pre.1 * Bump version to 1.5.2-pre.2 * keep pipeline_description changes --------- Co-authored-by: Ali Khan <[email protected]> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> * minor bugfix for passing modality * lint * cleaned more instances of segTxw * lint * removed unneeded def --------- Co-authored-by: Jordan DeKraker <[email protected]> Co-authored-by: Ali Khan <[email protected]> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
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run_inference was only accepting a single input image, this makes it accept a list of images too, and makes it so --force-nnunet-model T1T2w grabs both T1w and T2w as inputs.
this didn't affect any workflow computations, just the subsequent dscalar.nii and spec file that would have the wrong curvature map
fix logical error
Bump version to 1.5.2-pre.1
Bump version to 1.5.2-pre.2
keep pipeline_description changes