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@khanlab

Khan Computational Imaging Lab

  • 12 followers
  • Robarts Research Institute, Western University, London, Canada

Popular repositories Loading

  1. hippunfold hippunfold Public

    BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)

    Python 52 14

  2. snakebids snakebids Public

    Snakemake + BIDS

    Python 17 14

  3. tar2bids tar2bids Public

    Python 7 9

  4. neuroglia-helpers neuroglia-helpers Public

    Helper and wrapper scripts for using Singularity locally and on compute canada

    Shell 5 7

  5. autobids autobids Public archive

    Automated Dicom to BIDS and pipelines using compute canada

    Shell 5 4

  6. bids-tutorial bids-tutorial Public

    Tutorial on BIDS - Methods Lunch Feb 12

    5

Repositories

Showing 10 of 114 repositories
  • hippunfold Public

    BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)

    khanlab/hippunfold’s past year of commit activity
    Python 52 MIT 14 17 (1 issue needs help) 3 Updated Dec 22, 2024
  • hippunfold_deps Public

    Dependencies container for hippocampal_autotop (niftynet, minified fsl/ants, c3d, mcr)

    khanlab/hippunfold_deps’s past year of commit activity
    Python 0 MIT 1 0 1 Updated Dec 20, 2024
  • snakebids Public

    Snakemake + BIDS

    khanlab/snakebids’s past year of commit activity
    Python 17 MIT 14 21 7 Updated Dec 20, 2024
  • tar2bids-heuristics Public

    Study heuristics for autobids

    khanlab/tar2bids-heuristics’s past year of commit activity
    Python 0 1 0 1 Updated Dec 20, 2024
  • LOBE_analysis Public

    Snakemake workflow for LOBE study

    khanlab/LOBE_analysis’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Dec 19, 2024
  • cvpl_tools Public

    A Python package for utilities and classes related to the file I/O, dataset record keeping for image processing and computer vision.

    khanlab/cvpl_tools’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Dec 19, 2024
  • SPIMprep Public

    A Snakemake workflow for pre-processing single plane illumination microscopy (SPIM, aka lightsheet microscopy)

    khanlab/SPIMprep’s past year of commit activity
    Python 3 MIT 1 9 (4 issues need help) 2 Updated Dec 12, 2024
  • hippunfold-plot Public

    Plotting functions for hippocampal surface maps from HippUnfold

    khanlab/hippunfold-plot’s past year of commit activity
    Jupyter Notebook 1 MIT 0 4 0 Updated Dec 6, 2024
  • khanlab.github.io Public

    Khan Lab website

    khanlab/khanlab.github.io’s past year of commit activity
    HTML 2 10 1 2 Updated Dec 1, 2024
  • gcnn_dmri Public
    khanlab/gcnn_dmri’s past year of commit activity
    Python 1 MIT 0 0 1 Updated Dec 1, 2024
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