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Import patch #314

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merged 7 commits into from
Jul 24, 2024
+981 −1,294
Merged

Import patch #314

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c720282
fix dependency versions for snakebids, pulp
Jul 23, 2024
b2f8809
poetry lock
Jul 23, 2024
eaf49fd
Revert "poetry lock"
Jul 23, 2024
5525b4b
redo poetry lock
Jul 23, 2024
4e66045
python >3.8
Jul 23, 2024
3e246ce
dropped testing for python <3.8
Jul 23, 2024
37db436
moved import to where it is needed
Jul 24, 2024
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2 changes: 1 addition & 1 deletion .github/workflows/python-testing.yml
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Expand Up @@ -35,7 +35,7 @@ jobs:
needs: ["quality"]
strategy:
matrix:
python-version: ["3.7", "3.8", "3.9"]
python-version: ["3.8", "3.9"]

steps:
- name: Install non-python dependencies
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2 changes: 2 additions & 0 deletions hippunfold/workflow/rules/common.smk
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@@ -1,3 +1,5 @@
from appdirs import AppDirs

# take mean of all scans if >1, otherwise just copy the one scan
def get_avg_or_cp_scans_cmd(wildcards, input, output):
if len(input) > 1:
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1 change: 0 additions & 1 deletion hippunfold/workflow/rules/nnunet.smk
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@@ -1,5 +1,4 @@
import re
from appdirs import AppDirs


def get_nnunet_input(wildcards):
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