lint

khanlab · Dec 18, 2024 · f3ec282 · f3ec282
1 parent ba7b273
commit f3ec282
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Showing 2 changed files with 1 addition and 8 deletions.
diff --git a/hippunfold/workflow/rules/download.smk b/hippunfold/workflow/rules/download.smk
@@ -67,8 +67,6 @@ rule import_template_dseg:
         ),
     group:
         "subj"
-    container:
-        config["singularity"]["autotop"]
     shell:
         "cp {params.template_seg} {output.template_seg}"
 
@@ -122,8 +120,6 @@ rule import_template_coords:
         ),
     group:
         "subj"
-    container:
-        config["singularity"]["autotop"]
     shell:
         "cp {params.template_coords} {output.template_coords}"
 
@@ -161,7 +157,6 @@ rule flip_template_coords:
         "c3d {input.template_coords} -flip x -o {output.template_coords} "
 
 
-
 rule import_template_anat:
     input:
         template_dir=Path(download_dir) / "template" / config["template"],
@@ -183,8 +178,6 @@ rule import_template_anat:
         ),
     group:
         "subj"
-    container:
-        config["singularity"]["autotop"]
     shell:
         "cp {params.template_anat} {output.template_anat}"
 
@@ -218,4 +211,3 @@ rule flip_template_anat:
         "subj"
     shell:
         "c3d {input.template_anat} -flip x -o {output.template_anat} "
-
diff --git a/hippunfold/workflow/rules/templateseg.smk b/hippunfold/workflow/rules/templateseg.smk
@@ -6,6 +6,7 @@ def get_smoothing_opt(wildcards):
 
     return f"-s {gradient_sigma}vox {warp_sigma}vox"
 
+
 rule template_reg:
     input:
         fixed_img=bids(
-Original file line number
+Diff line change
@@ Expand Up / @@ -6,6 +6,7 @@ def get_smoothing_opt(wildcards): @@
         return f"-s {gradient_sigma}vox {warp_sigma}vox"
     rule template_reg:
         input:
             fixed_img=bids(
@@ Expand Down @@