fix a couple typos

khanlab · Feb 15, 2024 · e191a95 · e191a95
1 parent 27f4e7b
commit e191a95
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/hippunfold/workflow/rules/preproc_t1.smk b/hippunfold/workflow/rules/preproc_t1.smk
@@ -72,7 +72,7 @@ else:
 
 def reg_to_template_cmd(wildcards, input, output):
 
-    ref = (
+    ref = str(
         Path(input.template_dir)
         / config["template_files"][config["template"]][wildcards.modality],
     )

diff --git a/hippunfold/workflow/rules/shape_inject.smk b/hippunfold/workflow/rules/shape_inject.smk
@@ -106,7 +106,7 @@ rule import_template_shape:
     container:
         config["singularity"]["autotop"]
     shell:
-        "cp {input} {output}"
+        "cp {params.template_seg} {output.template_seg}"
 
 
 def get_image_pairs(wildcards, input):