_osf to _url

khanlab · Feb 12, 2024 · ca78673 · ca78673
1 parent 6df9888
commit ca78673
Show file tree

Hide file tree

Showing 2 changed files with 5 additions and 5 deletions.
diff --git a/hippunfold/config/snakebids.yml b/hippunfold/config/snakebids.yml
@@ -469,14 +469,14 @@ nnunet_model:
   synthseg_v0.1: 'zenodo.org/record/8184230/files/trained_model.3d_fullres.Task102_synsegGenDetailed.nnUNetTrainerV2.model_best.tar'
   synthseg_v0.2: 'zenodo.org/record/8184230/files/trained_model.3d_fullres.Task203_synthseg.nnUNetTrainerV2.model_best.tar'
 
-atlas_links_osf:
+atlas_links_url:
   multihist7: 'files.ca-1.osf.io/v1/resources/v8acf/providers/osfstorage/65395b782827451220b86dd8/?zip='
   bigbrain: 'files.ca-1.osf.io/v1/resources/v8acf/providers/osfstorage/65395b8b13d27b123094c96f/?zip='
   magdeburg: 'files.ca-1.osf.io/v1/resources/v8acf/providers/osfstorage/65395b8013d27b122f94c938/?zip='
   freesurfer: 'files.ca-1.osf.io/v1/resources/v8acf/providers/osfstorage/65395b8513d27b123094c96a/?zip='
 #to get hash, see https://github.com/CenterForOpenScience/osf.io/issues/8256#issuecomment-379833911
 
-template_links_osf:
+template_links_url:
   CITI168: 'files.ca-1.osf.io/v1/resources/v8acf/providers/osfstorage/65395bf0282745121fb86a93/?zip='
   dHCP: 'files.ca-1.osf.io/v1/resources/v8acf/providers/osfstorage/65395bff13d27b123094c9b4/?zip='
   MBMv2: 'files.ca-1.osf.io/v1/resources/v8acf/providers/osfstorage/65395c0887852d133ca597dd/?zip='

diff --git a/hippunfold/workflow/rules/downloads.smk b/hippunfold/workflow/rules/downloads.smk
@@ -1,6 +1,6 @@
 rule download_atlas:
     params:
-        url=config["atlas_links_osf"][config["atlas"]],
+        url=config["atlas_links_url"][config["atlas"]],
     output:
         model_zip=os.path.join(download_dir, config["atlas"] + ".zip"),
     container:
@@ -11,7 +11,7 @@ rule download_atlas:
 
 rule download_template:
     params:
-        url=config["template_links_osf"][config["template"]],
+        url=config["template_links_url"][config["template"]],
     output:
         model_zip=os.path.join(download_dir, config["template"] + ".zip"),
     container:
@@ -22,7 +22,7 @@ rule download_template:
 
 rule download_template_shape:
     params:
-        url=config["template_links_osf"][config["inject_template"]],
+        url=config["template_links_url"][config["inject_template"]],
     output:
         model_zip=os.path.join(download_dir, config["inject_template"] + ".zip"),
     container: