added macaque template, manually registered to CITI168

khanlab · Apr 1, 2023 · c2d2d88 · c2d2d88
1 parent 12e26d1
commit c2d2d88
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Showing 4 changed files with 19 additions and 1 deletion.
diff --git a/hippunfold/config/snakebids.yml b/hippunfold/config/snakebids.yml
@@ -182,7 +182,8 @@ parse_args:
     choices:
       - 'CITI168'
       - 'dHCP'
-    default: 'CITI168'
+      - 'macaque'
+    default: 'macaque'
     help: 'Set the template to use for registration to coronal oblique. (default: %(default)s)'
 
   --t1_reg_template:
@@ -341,6 +342,13 @@ template_files:
     crop_ref: resources/CITI168/T2w_300umCoronalOblique_hemi-{hemi}.nii.gz
     crop_refT1w: resources/CITI168/T1w_300umCoronalOblique_hemi-{hemi}.nii.gz
     Mask_crop: resources/CITI168/Mask_300umCoronalOblique_hemi-{hemi}.nii.gz
+  macaque:
+    T1w: resources/tpl-macaque/tpl-macaque_T1w.nii.gz
+    xfm_corobl: resources/tpl-macaque/tpl-macaque_to-CIT168corobl_type-itk_affine.xfm.txt
+    crop_ref: resources/CITI168/T2w_300umCoronalOblique_hemi-{hemi}.nii.gz
+    crop_refT1w: resources/CITI168/T1w_300umCoronalOblique_hemi-{hemi}.nii.gz
+    Mask_crop: resources/CITI168/Mask_300umCoronalOblique_hemi-{hemi}.nii.gz
+
 
 atlas: 
   - bigbrain

diff --git a/hippunfold/resources/tpl-macaque/tpl-macaque_T1w.nii.gz b/hippunfold/resources/tpl-macaque/tpl-macaque_T1w.nii.gz
diff --git a/hippunfold/resources/tpl-macaque/tpl-macaque_to-CIT168_type-itk_affine.xfm.txt b/hippunfold/resources/tpl-macaque/tpl-macaque_to-CIT168_type-itk_affine.xfm.txt
@@ -0,0 +1,5 @@
+#Insight Transform File V1.0
+#Transform 0
+Transform: MatrixOffsetTransformBase_double_3_3
+Parameters: -0.49835744837414203 0.01963371306987121 0.0354170998403839 -0.035618120229850725 -0.004466968749629277 -0.4987097309071499 -0.01926663336718835 -0.4995943989891002 0.005850926201426736 -1.57242568596823 -31.119947611968257 -10.277345680343442
+FixedParameters: 0 0 0
diff --git a/hippunfold/resources/tpl-macaque/tpl-macaque_to-CIT168corobl_type-itk_affine.xfm.txt b/hippunfold/resources/tpl-macaque/tpl-macaque_to-CIT168corobl_type-itk_affine.xfm.txt
@@ -0,0 +1,5 @@
+#Insight Transform File V1.0
+#Transform 0
+Transform: MatrixOffsetTransformBase_double_3_3
+Parameters: -0.49835744837414203 0.03670164767632805 0.017112633824793614 -0.035618120229850725 -0.29674795283817795 -0.40083903314280883 -0.01926663336718835 -0.40074127522965924 0.2983875925725079 -1.8069498178992485 -26.62953724377328 -12.512460014214101
+FixedParameters: 0 0 0