LUTs to OSF for easier additions in the future

khanlab · Jun 12, 2024 · bceaac1 · bceaac1
1 parent f029d5f
commit bceaac1
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Showing 9 changed files with 3 additions and 97 deletions.
diff --git a/hippunfold/resources/label_lut/desc-subfields_atlas-bigbrain_dseg.tsv b/hippunfold/resources/label_lut/desc-subfields_atlas-bigbrain_dseg.tsv
diff --git a/hippunfold/resources/label_lut/desc-subfields_atlas-freesurfer_dseg.tsv b/hippunfold/resources/label_lut/desc-subfields_atlas-freesurfer_dseg.tsv
diff --git a/hippunfold/resources/label_lut/desc-subfields_atlas-magdeburg_dseg.tsv b/hippunfold/resources/label_lut/desc-subfields_atlas-magdeburg_dseg.tsv
diff --git a/hippunfold/resources/label_lut/desc-subfields_atlas-mouse_dseg.tsv b/hippunfold/resources/label_lut/desc-subfields_atlas-mouse_dseg.tsv
diff --git a/hippunfold/resources/label_lut/desc-subfields_atlas-multihist7_dseg.tsv b/hippunfold/resources/label_lut/desc-subfields_atlas-multihist7_dseg.tsv
diff --git a/hippunfold/resources/label_lut/desc-subfields_dseg.tsv b/hippunfold/resources/label_lut/desc-subfields_dseg.tsv
diff --git a/hippunfold/resources/label_lut/desc-subfields_freeview_desg.tsv b/hippunfold/resources/label_lut/desc-subfields_freeview_desg.tsv
diff --git a/hippunfold/resources/label_lut/dseg.tsv b/hippunfold/resources/label_lut/dseg.tsv
diff --git a/hippunfold/workflow/rules/qc.smk b/hippunfold/workflow/rules/qc.smk
@@ -54,9 +54,9 @@ rule get_subfield_vols_subj:
             hemi=config["hemi"],
             allow_missing=True,
         ),
-        lookup_tsv=Path(workflow.basedir).parent
-        / "resources"
-        / "label_lut"
+        lookup_tsv=Path(download_dir) /
+        / "atlas"
+        / "{atlas}"
         / "desc-subfields_atlas-{atlas}_dseg.tsv",
     group:
         "subj"