added marmoset template (#297)

Co-authored-by: Jordan DeKraker <[email protected]>

hippunfold/config/snakebids.yml

@@ -152,8 +152,7 @@ parse_args:
       - 'CIVM'
       - 'ABAv3'
     default: 'CITI168'
-    help: 'Set the template to use for registration to coronal oblique (and optionally for template-based segmentation if --use-template-seg is enabled). CITI168 is for adult human data, dHCP is for neonatal human data, MBMv2 is for ex vivo marmoset data, MBMv3 is for in vivo marmoset data, CIVM is for in vivo macaque data, and ABAv3 is for mouse data. (default: %(default)s)'
-
+    help: 'Set the template to use for registration to coronal oblique (and optionally for template-based segmentation if --use-template-seg is enabled). CITI168 is for adult human data, dHCP is for neonatal human data, MBMv2 is for ex vivo marmoset data, MBMv3 is for in vivo marmoset data, CIVM is for in vivo macaque data, and ABAv3 is for mouse data. When using a non-human template, consider using a corresponding atlas. (default: %(default)s)'
 
 
 
@@ -233,6 +232,7 @@ parse_args:
       - 'magdeburg'
       - 'freesurfer'
       - 'multihist7'
+      - 'macaque'
       - 'mouse'
     default: 
       - 'multihist7'
@@ -465,6 +465,10 @@ atlas_files:
     label_nii: sub-all_hemi-{hemi}_space-unfold_label-hipp_desc-freesurfersubfields_dseg.nii.gz
     lut: desc-subfields_atlas-mfreesurfer_dseg.tsv
     label_list: freesurfer_labellist.txt
+  macaque:
+    label_nii: sub-bigmac_hemi-{hemi}_space-unfold_label-hipp_desc-macaquesubfields_dseg.nii.gz
+    lut: desc-subfields_atlas-macaque_dseg.tsv
+    label_list: macaque_labellist.txt
   mouse:
     label_nii: sub-ABAv3_space-unfold_label-hipp_desc-mousesubfields_dseg.nii.gz
     lut: desc-subfields_atlas-mouse_dseg.tsv
@@ -530,6 +534,7 @@ resource_urls:
     bigbrain: 'files.ca-1.osf.io/v1/resources/v8acf/providers/osfstorage/65395b8b13d27b123094c96f/?zip='
     magdeburg: 'files.ca-1.osf.io/v1/resources/v8acf/providers/osfstorage/65395b8013d27b122f94c938/?zip='
     freesurfer: 'files.ca-1.osf.io/v1/resources/v8acf/providers/osfstorage/65395b8513d27b123094c96a/?zip='
+    macaque: 'files.ca-1.osf.io/v1/resources/v8acf/providers/osfstorage/6661f504d835c42bcb4cddab/?zip='
     mouse: 'files.ca-1.osf.io/v1/resources/v8acf/providers/osfstorage/666884380f8c80103a3c9569/?zip='
   template:
     CITI168: 'files.ca-1.osf.io/v1/resources/v8acf/providers/osfstorage/65395bf0282745121fb86a93/?zip='