quick fix

have to figure out why `snakemake.input.lbl` is a NamedList when it should just be a string when we run with e.g. `--modality segT2w` and `--skip-template-inject-shape` but forced the type cast here..
khanlab · Mar 24, 2022 · 194de93 · 194de93
1 parent b227719
commit 194de93
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/hippunfold/workflow/scripts/laplace_coords.py b/hippunfold/workflow/scripts/laplace_coords.py
@@ -14,7 +14,7 @@
 
 # initialize foreground (gm), source, and sink
 
-lbl_nib = nib.load(snakemake.input.lbl)
+lbl_nib = nib.load(str(snakemake.input.lbl))
 lbl = lbl_nib.get_fdata()
 
 idxgm = np.zeros(lbl.shape)