added references section

khanlab · May 29, 2024 · 15d2681 · 15d2681
1 parent eec62a5
commit 15d2681
Show file tree

Hide file tree

Showing 2 changed files with 12 additions and 0 deletions.
diff --git a/docs/contributing/references.md b/docs/contributing/references.md
@@ -0,0 +1,11 @@
+# References
+
+If you use HippUnfold, please cite
+- DeKraker, Jordan, Roy AM Haast, Mohamed D. Yousif, Bradley Karat, Jonathan C. Lau, Stefan Köhler, and Ali R. Khan. "Automated hippocampal unfolding for morphometry and subfield segmentation with HippUnfold." elife 11 (2022): e77945.
+
+If you use a custom UNet model, template, or atlas, please cite to corresponding works:
+- Eichert, Nicole, Jordan DeKraker, Amy FD Howard, Istvan N. Huszar, Silei Zhu, Jerome Sallet, Karla L. Miller, Rogier B. Mars, Saad Jbabdi, and Boris C. Bernhardt. "Hippocampal connectivity patterns echo macroscale cortical evolution in the primate brain." bioRxiv (2023): 2023-09.
+- DeKraker, Jordan, Jonathan C. Lau, Kayla M. Ferko, Ali R. Khan, and Stefan Köhler. "Hippocampal subfields revealed through unfolding and unsupervised clustering of laminar and morphological features in 3D BigBrain." NeuroImage 206 (2020): 116328.
+
+After running HippUnfold, consider using the [HippoMaps](https://github.com/MICA-MNI/hippomaps) tools and example analyses:
+DeKraker, Jordan, Donna Gift Cabalo, Jessica Royer, Ali R. Khan, Bradley Karat, Oualid Benkarim, Raul Rodriguez-Cruces et al. "HippoMaps: Multiscale cartography of human hippocampal organization." bioRxiv (2024): 2024-02.
diff --git a/docs/index.md b/docs/index.md
@@ -63,6 +63,7 @@ outputs/QC
 :hidden:
 :maxdepth: 2
 
+contributing/references
 contributing/contributing
 ```