Update slingshot benchmark

jaydu1 · Sep 24, 2023 · 3a6fcbb · 3a6fcbb
1 parent 5f7620e
commit 3a6fcbb
Show file tree

Hide file tree

Showing 2 changed files with 2 additions and 1 deletion.
diff --git a/...hetic datasets/Slingshot/my_slingshot.Rmd → ...tic datasets/Slingshot/plot_slingshot.Rmd b/...hetic datasets/Slingshot/my_slingshot.Rmd → ...tic datasets/Slingshot/plot_slingshot.Rmd
diff --git a/...ets/Slingshot/Seurat_batch_correction.Rmd → ...ic datasets/Slingshot/train_slingshot.Rmd b/...ets/Slingshot/Seurat_batch_correction.Rmd → ...ic datasets/Slingshot/train_slingshot.Rmd
@@ -12,7 +12,8 @@ library(anndata)
 ```
 
 ```{r}
-dd <- read_h5ad("/project/jingshuw/trajectory_analysis/data/cortex_mouse_brain_merge/cortex_mouse_merged_raw_count_transpose.h5ad",backed = NULL)
+# "/project/jingshuw/trajectory_analysis/data/cortex_mouse_brain_merge/cortex_mouse_merged_raw_count_transpose.h5ad"
+dd <- read_h5ad("cortex_mouse_merged_raw_count_transpose.h5ad",backed = NULL)
 ```
 ```{r}
 library(Seurat)