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Updates for pydantic v2 #619

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merged 9 commits into from
Jul 7, 2023
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dougiesquire
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@dougiesquire dougiesquire commented Jul 6, 2023

Change Summary

This PR implements changes required for Intake-ESM to update to the recently-released pydantic v2. I'd appreciate someone taking a close look at this as I'm not a pydantic expert, especially v2.

Related issue number

Closes #617

Checklist

  • Unit tests for the changes exist
  • Tests pass on CI

@dougiesquire
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dougiesquire commented Jul 6, 2023

Agh, the autodoc_pydantic Sphinx extension does not support pydantic v2 and it doesn't look like it will any time soon, see mansenfranzen/autodoc_pydantic#146.

What to do?

  • Update Intake-ESM to use pydantic v2 and lose the autodoc_pydantic extension, resulting in the API section of the docs being poorly formatted. (Unfortunately, I can't generate a version of the docs atm to demonstrate what this would look like as the docs rely on ecgtools which also requires pydantic updates, see Updates for pydantic v2 ncar-xdev/ecgtools#164. Yes, we're in a state right now where Intake-ESM and ecgtools are both failing because the other is failing),
  • Pin pydantic to v1 in Intake-ESM (and ecgtools).

@dougiesquire
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I tried to disable the autodoc_pydantic extension and temporarily change the CI doc environment to install ecgtools from ncar-xdev/ecgtools#164 so the docs would build in this PR, but there's another issue with the docs that makes the build fail intermittently.

Instead, here's is a screenshot of the API docs for a pydantic object rendered without the autodoc_pydantic extension. I think they look fine. Let me know if you agree and I'll finish up this PR.

Screenshot 2023-07-06 at 10 51 26 pm

@mgrover1
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mgrover1 commented Jul 6, 2023

I tried to disable the autodoc_pydantic extension and temporarily change the CI doc environment to install ecgtools from ncar-xdev/ecgtools#164 so the docs would build in this PR, but there's another issue with the docs that makes the build fail intermittently.

Instead, here's is a screenshot of the API docs for a pydantic object rendered without the autodoc_pydantic extension. I think they look fine. Let me know if you agree and I'll finish up this PR.

Screenshot 2023-07-06 at 10 51 26 pm

Thanks so much @dougiesquire for the hard work here - I think this looks fine and we can proceed!

@dougiesquire
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dougiesquire commented Jul 7, 2023

Ready for review @mgrover1

Note, the docs build is still failing because of:

  1. the pydantic changes required in ecgtools
  2. another intermittent issue when running docs/source/how-to/build-a-catalog-from-timeseries-files.md.

I suggest:

@mgrover1 mgrover1 merged commit 92e771a into intake:main Jul 7, 2023
@dougiesquire dougiesquire deleted the 617_pydantic_update branch July 7, 2023 03:06
@dougiesquire dougiesquire mentioned this pull request Jul 7, 2023
@mansenfranzen
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@dougiesquire You can now test the new autodoc_pydantic version supporting pydantic v2 via pip install autodoc_pydantic==2.0.0. The dev docs already showcase v2 support (see here). Migration guide is available here.

Any feedback is more than appreciated. The current autodoc_pydantic version 2.0.0 on pypi remains yanked for one week until final release.

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Updates needed for pydantic v2
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