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Exception when annotating something after a longer pause #4158
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- It should be ok to load a CAS without upgrading (no auto-cas upgrade) when loading in shared mode
- It should be ok to load a CAS without upgrading (no auto-cas upgrade) when loading in shared mode
- Added new CAS Doctor check for unreachable feature structures - Added new CAS Doctor repair for unreachable feature structures - Improved logging in storage system - Improves storage utilities
The root of the problem is an upstream issue: apache/uima-uimaj#345 The SelectFS may create temporary annotations which are not tracked in the CAS but which consume IDs. These are not serialized. When reconstructing the IDs from a serialized CAS, the IDs of the non-serialized temporary annotations cannot be accounted for leading to the IDs of the FSes in the loaded CAS to differ from the ones in the original CAS. |
- Added new CAS Doctor check for unreachable feature structures - Added new CAS Doctor repair for unreachable feature structures - Improved logging in storage system - Improves storage utilities
- Replace calls to SelectFS with calls to CASUtil which does not create temporary annotations
- Added new CAS Doctor check for unreachable feature structures - Updated UpgradeCasRepair to report garbarge-collected feature structures - Updated description of UpgradeCasRepair
…-when-annotating-something-after-a-longer-pause-29.x #4158 - Exception when annotating something after a longer pause
…ing-after-a-longer-pause * main: #4158 - Exception when annotating something after a longer pause No issue: Enable parallel builds #4158 - Exception when annotating something after a longer pause #4158 - Exception when annotating something after a longer pause #4192 - Upgrade dependencies #4201 - Layer export as JSON does not include coloring rules #4199 - Jumping to the end of a long annotation sometimes does not work #4198 - Show layer name instead of no-label #4196 - Save memory by not creating empty arrays in CAS % Conflicts: % inception/inception-diag/src/main/java/de/tudarmstadt/ukp/clarin/webanno/diag/checks/UnreachableAnnotationsCheck.java % inception/inception-diag/src/main/java/de/tudarmstadt/ukp/clarin/webanno/diag/config/CasDoctorAutoConfiguration.java
…-when-annotating-something-after-a-longer-pause #4158 - Exception when annotating something after a longer pause
* main: (42 commits) #4221 - Upgrade dependencies #4219 - Improve speed of importing a large KB #4217 - Speed up properties list loading on KB page #4209 - Improve query speed for large KBs when using RDF4J Lucene FTS #4212 - Unable to mark local KB as read-only [maven-release-plugin] prepare for next development iteration [maven-release-plugin] prepare release inception-29.3 No issue. Fix PubMed test. #4192 - Upgrade dependencies No issue. Fix PubMed test. #4205 - Ability to refresh document to load pending suggestions #4158 - Exception when annotating something after a longer pause #4158 - Exception when annotating something after a longer pause No issue: Enable parallel builds #4158 - Exception when annotating something after a longer pause #4158 - Exception when annotating something after a longer pause #4192 - Upgrade dependencies #4201 - Layer export as JSON does not include coloring rules #4199 - Jumping to the end of a long annotation sometimes does not work #4198 - Show layer name instead of no-label ... % Conflicts: % inception/inception-workload-dynamic/src/main/java/de/tudarmstadt/ukp/inception/workload/dynamic/annotation/DynamicAnnotatorWorkflowActionBarItemGroup.java % pom.xml
Describe the bug
Sometimes, there is an exception when performing an action in the annotation editor (like annotating something, selecting an annotation or simply reloading) after a longer pause. This seems to happen in particular when recommenders are active in the background.
To Reproduce
Steps to reproduce the behavior:
cas-storage.cache.idle-cas-eviction-delay=5s
Expected behavior
No such exception.
Please complete the following information:
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