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Major revamp of functions and visualizations
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@mbernste mbernste released this 23 Aug 14:15
· 9 commits to main since this release
v1.0.0
7c9aa74
  • Major refactoring and revamping of the functionality from Verion 0 to 1
  • Refactored pipeline for computing cellular niches
  • Ability to run more exact kernel density estimation in addition to the grid approximation
  • New visualization tools for exploring cell type enrichment in cellular niches
  • New visualization tools for visualizing ligand-receptor co-expression in neighboring cells
  • Ability to download ligand-receptor pairs from OmniPath
  • Removal of many functions deemed redundant
  • New tutorial notebook
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