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Releases: immunitastx/monkeybread

Minor bug fix

23 Aug 18:14
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v1.0.3

Fixed bug

Added input parameters location_and_density plots

23 Aug 17:39
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v1.0.2

Added ability to control resolution in density_and_location plot

Fixed documentation

23 Aug 15:54
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Fixes to doc strings to enable Sphinx docs build

Major revamp of functions and visualizations

23 Aug 14:15
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  • Major refactoring and revamping of the functionality from Verion 0 to 1
  • Refactored pipeline for computing cellular niches
  • Ability to run more exact kernel density estimation in addition to the grid approximation
  • New visualization tools for exploring cell type enrichment in cellular niches
  • New visualization tools for visualizing ligand-receptor co-expression in neighboring cells
  • Ability to download ligand-receptor pairs from OmniPath
  • Removal of many functions deemed redundant
  • New tutorial notebook