Releases: immunitastx/monkeybread
Releases · immunitastx/monkeybread
Minor bug fix
Added input parameters location_and_density plots
v1.0.2 Added ability to control resolution in density_and_location plot
Fixed documentation
Fixes to doc strings to enable Sphinx docs build
Major revamp of functions and visualizations
- Major refactoring and revamping of the functionality from Verion 0 to 1
- Refactored pipeline for computing cellular niches
- Ability to run more exact kernel density estimation in addition to the grid approximation
- New visualization tools for exploring cell type enrichment in cellular niches
- New visualization tools for visualizing ligand-receptor co-expression in neighboring cells
- Ability to download ligand-receptor pairs from OmniPath
- Removal of many functions deemed redundant
- New tutorial notebook