update structure and content of diagnostics section #1076
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break up long intro paragraphs, shortened wording, and added information including citation
add subsection for sequencing and LFTs
added section on RT LAMP with one review cited and one recent study cited. Also added a section on lateral flow tests as to-do. Will need to add more examples of both. Also changed some organization and formatting, for example moved sequencing to its own section, which was previously part of the intro to molecular tests section.
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added minimum of LFT section under molecular tests, minor edits elsewhere
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Thanks for the edits @jessegmeyerlab. We'll likely review this and give feedback next week. You can tag me if you run into any issues with Manubot. |
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Hey @jessegmeyerlab glad you joined! Great additions, I have made some minor suggested changes with one or two questions. However, I defer to @rando2 for approval and review of the PR. :)
Co-authored-by: Ronan Lordan <[email protected]>
Co-authored-by: Ronan Lordan <[email protected]>
Co-authored-by: Ronan Lordan <[email protected]>
Co-authored-by: Ronan Lordan <[email protected]>
Co-authored-by: Ronan Lordan <[email protected]>
Co-authored-by: Ronan Lordan <[email protected]>
Co-authored-by: Ronan Lordan <[email protected]>
Co-authored-by: Ronan Lordan <[email protected]>
Co-authored-by: Ronan Lordan <[email protected]>
Co-authored-by: Ronan Lordan <[email protected]>
Co-authored-by: Ronan Lordan <[email protected]>
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@RLordan thanks for taking the time to go through my suggestions! I accepted most of them and replied to a couple. What should I do next? |
Co-authored-by: Ronan Lordan <[email protected]>
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AppVeyor build 1.0.4740 for commit b9132a1 is now complete. Found 26 potential spelling error(s). Preview:content/10.diagnostics.md:23:LFTscontent/10.diagnostics.md:26:CLIA content/10.diagnostics.md:26:LFIA content/10.diagnostics.md:124:thermocycler content/10.diagnostics.md:125:cycler content/10.diagnostics.md:127:detecion content/10.diagnostics.md:129:sensitity content/10.diagnostics.md:135:benchmarked content/10.diagnostics.md:138:infective content/10.diagnostics.md:139:Biolabs content/10.diagnostics.md:139:WarmStart cont... |
Co-authored-by: Ronan Lordan <[email protected]>
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AppVeyor build 1.0.4741 ... Found 25 potential spelling error(s). Preview:content/10.diagnostics.md:23:LFTscontent/10.diagnostics.md:26:CLIA content/10.diagnostics.md:26:LFIA content/10.diagnostics.md:124:thermocycler content/10.diagnostics.md:125:cycler content/10.diagnostics.md:127:detecion content/10.diagnostics.md:129:sensitity content/10.diagnostics.md:135:benchmarked content/10.diagnostics.md:138:infective content/10.diagnostics.md:139:WarmStart content/10.diagnostics.md:140:IVT content/ for commit e3d17a8 is now complete. The rendered manuscript from this build is temporarily available for download at: |
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This is fantastic @jessegmeyerlab! Would we be able to get your author info for https://github.com/greenelab/covid19-review/blob/master/content/metadata.yaml? Either edit the file and add it or just let me know and I can add it for you! It's great to have you on the team!
Thank you so much to @RLordan for taking the lead while I was out dealing with a COVID outbreak in my family (and @RLordan please feel free to merge text that you've approved in the future, ideally just check the PDF builds OK and I can always fix minor formatting issues later!)
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@RLordan I noticed your review is marked as "needs changes," so just wanted to check if the changes have been made or whether this PR is still evolving! Thank you so much again for being so on top of things!!! |
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Co-authored-by: HM Rando <[email protected]>
Co-authored-by: HM Rando <[email protected]>
Co-authored-by: HM Rando <[email protected]>
Co-authored-by: HM Rando <[email protected]>
Co-authored-by: HM Rando <[email protected]>
Thanks @rando2, glad you are all doing well again. I think I approved the changes correctly, it should be good to go. A great addition by @jessegmeyerlab |
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Fabulous! I will merge, @jessegmeyerlab do you mind opening a new PR to add your author info? (Or let me know and I can help!) |
Thanks for looking at this. I'm not sure how to handle the contributions and manuscript section so can you please add how you see fit? Here is my info: Let me know if you need anything else. |
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| affiliations: | ||
| - Department of Biochemistry, Medical College of Wisconsin, Milwaukee, Wisconsin, United States of America | ||
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| string: "None" |
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@jessegmeyerlab The only other thing I need from you is just any disclosure of conflicts of interest -- or just okay the "None" I have here!
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I do not have any conflicts of interest
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Sounds great! I'm merging it in now :)
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AppVeyor build 1.0.4754 for commit e0e44d5 is now complete. Found 32 potential spelling error(s). Preview:content/10.diagnostics.md:23:LFTscontent/10.diagnostics.md:26:CLIA content/10.diagnostics.md:26:LFIA content/10.diagnostics.md:124:thermocycler content/10.diagnostics.md:125:cycler content/10.diagnostics.md:127:detecion content/10.diagnostics.md:129:sensitity content/10.diagnostics.md:135:benchmarked content/10.diagnostics.md:138:infective content/10.diagnostics.md:139:WarmStart content/10.diagnostics.md:140:IVT content/... |
[ci skip] This build is based on 2158615. This commit was created by the following CI build and job: https://github.com/greenelab/covid19-review/commit/2158615c6b919e24e675a95bbb27cf9d97b33657/checks https://github.com/greenelab/covid19-review/runs/1664756456
[ci skip] This build is based on 2158615. This commit was created by the following CI build and job: https://github.com/greenelab/covid19-review/commit/2158615c6b919e24e675a95bbb27cf9d97b33657/checks https://github.com/greenelab/covid19-review/runs/1664756456
Description of the proposed additions or changes
Minor rewordings and paragraph structure changes in intro, and divided molecular tests into nucleic acid tests and protein tests (e.g. the abbott at-home rapid tests based on lateral flow). Added section on RT-LAMP detection of nucleic acids.
Looking forward to your feedback. Thanks for making this open for anyone to contribute!
Related issues
#1075
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