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44 Open 51 Closed
44 Open 51 Closed
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Issues list

1. How to cluster transcripts from multiple query gtf files? 2. Something wired about tss_id to investigate
#99 opened Dec 25, 2024 by dudududu12138
@gpertea
1
please tag a release.
#97 opened Nov 14, 2024 by EricDeveaud
missing transcripts in both tracking and combined.gtf
#96 opened Oct 22, 2024 by MaissaNabil
Class code "c" assigned to instance where terminal exon contains an overhang region.
#95 opened Oct 7, 2024 by Riley-Grindle
What is the proper interpretation of the .loci file?
#94 opened Sep 25, 2024 by jamestwebber
Stringent comparison of CDS using --strict-match
#92 opened Jul 29, 2024 by etvedte
Should I filter the transcript with class code "s"?
#89 opened Jun 10, 2024 by JD12138
1
missing stringTie ID in gffcomapre tmap file
#88 opened Mar 15, 2024 by Vermarashi
1
How can one visualize GFF files coverage, FPKM ; TPM values in a genome browser?
#87 opened Feb 6, 2024 by pbuendia
"Warning: merging adjacent/overlapping segments" when using GFFCompare
#86 opened Jan 18, 2024 by RobAlbn
GFFCompare ".tracking" file not containing all transcript IDs of all the provided annotation files
#85 opened Jan 18, 2024 by RobAlbn
No sensitivity or precision stats reported if multiple gffs given as input
#83 opened Nov 28, 2023 by gbdias
all input transcript attributes and features should be preserved in annotation mode enhancement
#82 opened Oct 11, 2023 by gpertea
@gpertea
add option to assemble transfrags in the combined.gtf output feature request
#79 opened May 2, 2023 by gpertea
@gpertea
1
There is no CDS information in the generated file！
#78 opened Mar 29, 2023 by XK4959
How is class code X is identified in stranded data?
#77 opened Dec 7, 2022 by srisarya
Merging different gtf files
#76 opened Sep 16, 2022 by TluckDucky
class_code 'u' in all transcripts
#75 opened Sep 7, 2022 by karlaarz
1
How to keep the CDS info for each transcript? enhancement
#73 opened Apr 20, 2022 by zmz1988
@gpertea
2
Missing tmap and refmap files in query gff directory + missing statistics in stats file
#72 opened Apr 20, 2022 by jchang97
Extract transposon
#71 opened Apr 12, 2022 by Wenwen012345
1
gff file and the XLOC numbers are not ordered correctly
#70 opened Apr 11, 2022 by dosshra
Availability of new version on Conda and biocontainers
#69 opened Apr 7, 2022 by bayraktar1
Comparing two different mouse strain gtf files
#67 opened Feb 28, 2022 by RNAseqer
keep reference transcripts
#65 opened Feb 24, 2021 by QiliShi
ProTip! Adding no:label will show everything without a label.