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Group rocksdb.sst.read.micros stat by IOActivity flush and compaction #11288
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Update: will try out the auto-vector of size 2 approach in StopWatch to fix regression of unordered_set as suggested by @ajkr by end of Wednesday. |
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@ajkr I made StopWatch able to accept 2 histograms using two-parameter approach and updated the perf result. I tried out the autovecotor as below but the perf regression is 1.88%
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…limit more test by passing down RO
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…supporting read async (#11404) Summary: **Context/Summary:** To better utilize `DbStressFSWrapper` for some assertion, #11288 removed an io_uring stress test hack for POSIX FS not supporting read async added in #11242 = It was removed based on the assumption that a later PR #11296 is sufficient to serve as an alternative workaround. But recent stress tests has shown the opposite, mostly because 11296 approach might be subjected to incompleteness when more `ReadOptions` are passed down as what #11288 has done. As a short-term solution to both work around POSIX FS constraint above and utilize `DbStressFSWrapper` for 11288 assertion, I proposed this PR. Pull Request resolved: #11404 Test Plan: - Stress test ensures 11288's assertion is still effective in `DbStressFSWrapper` ``` ./db_stress --acquire_snapshot_one_in=10000 --adaptive_readahead=0 --allow_data_in_errors=True --async_io=1 --avoid_flush_during_recovery=1 --avoid_unnecessary_blocking_io=0 --backup_max_size=104857600 --backup_one_in=100000 --batch_protection_bytes_per_key=8 --block_size=16384 --bloom_bits=16 --bottommost_compression_type=disable --bytes_per_sync=0 --cache_index_and_filter_blocks=0 --cache_size=8388608 --cache_type=hyper_clock_cache --charge_compression_dictionary_building_buffer=0 --charge_file_metadata=1 --charge_filter_construction=1 --charge_table_reader=0 --checkpoint_one_in=1000000 --checksum_type=kxxHash64 --clear_column_family_one_in=0 --compact_files_one_in=1000000 --compact_range_one_in=1000000 --compaction_pri=1 --compaction_ttl=0 --compression_max_dict_buffer_bytes=32767 --compression_max_dict_bytes=16384 --compression_parallel_threads=1 --compression_type=lz4 --compression_use_zstd_dict_trainer=1 --compression_zstd_max_train_bytes=0 --continuous_verification_interval=0 --data_block_index_type=0 --db=$db --db_write_buffer_size=0 --delpercent=4 --delrangepercent=1 --destroy_db_initially=0 --detect_filter_construct_corruption=1 --disable_wal=0 --enable_compaction_filter=0 --enable_pipelined_write=1 --enable_thread_tracking=0 --expected_values_dir=$exp --fail_if_options_file_error=1 --fifo_allow_compaction=0 --file_checksum_impl=crc32c --flush_one_in=1000000 --format_version=4 --get_current_wal_file_one_in=0 --get_live_files_one_in=1000000 --get_property_one_in=1000000 --get_sorted_wal_files_one_in=0 --index_block_restart_interval=4 --index_type=0 --ingest_external_file_one_in=0 --initial_auto_readahead_size=16384 --iterpercent=10 --key_len_percent_dist=1,30,69 --kill_random_test=888887 --level_compaction_dynamic_level_bytes=0 --lock_wal_one_in=1000000 --log2_keys_per_lock=10 --long_running_snapshots=0 --manual_wal_flush_one_in=1000 --mark_for_compaction_one_file_in=10 --max_auto_readahead_size=16384 --max_background_compactions=20 --max_bytes_for_level_base=10485760 --max_key=25000000 --max_key_len=3 --max_manifest_file_size=1073741824 --max_write_batch_group_size_bytes=1048576 --max_write_buffer_number=3 --max_write_buffer_size_to_maintain=8388608 --memtable_prefix_bloom_size_ratio=0.1 --memtable_protection_bytes_per_key=4 --memtable_whole_key_filtering=0 --memtablerep=skip_list --min_write_buffer_number_to_merge=2 --mmap_read=0 --mock_direct_io=True --nooverwritepercent=1 --num_file_reads_for_auto_readahead=0 --open_files=100 --open_metadata_write_fault_one_in=0 --open_read_fault_one_in=0 --open_write_fault_one_in=0 --ops_per_thread=20000000 --optimize_filters_for_memory=0 --paranoid_file_checks=0 --partition_filters=0 --partition_pinning=0 --pause_background_one_in=1000000 --periodic_compaction_seconds=0 --prefix_size=1 --prefixpercent=5 --prepopulate_block_cache=1 --preserve_internal_time_seconds=36000 --progress_reports=0 --read_fault_one_in=32 --readahead_size=16384 --readpercent=45 --recycle_log_file_num=0 --reopen=20 --ribbon_starting_level=1 --secondary_cache_fault_one_in=32 --secondary_cache_uri=compressed_secondary_cache://capacity=8388608 --snapshot_hold_ops=100000 --sst_file_manager_bytes_per_sec=0 --sst_file_manager_bytes_per_truncate=0 --stats_dump_period_sec=10 --subcompactions=1 --sync=0 --sync_fault_injection=1 --target_file_size_base=2097152 --target_file_size_multiplier=2 --test_batches_snapshots=0 --top_level_index_pinning=2 --unpartitioned_pinning=3 --use_direct_io_for_flush_and_compaction=0 --use_direct_reads=1 --use_full_merge_v1=0 --use_get_entity=0 --use_merge=1 --use_multi_get_entity=0 --use_multiget=1 --use_put_entity_one_in=0 --user_timestamp_size=0 --value_size_mult=32 --verify_checksum=1 --verify_checksum_one_in=1000000 --verify_db_one_in=100000 --verify_sst_unique_id_in_manifest=1 --wal_bytes_per_sync=524288 --wal_compression=none --write_buffer_size=4194304 --write_dbid_to_manifest=1 --writepercent=35 ``` - Monitor future stress test to show `MultiGet error: Not implemented: ReadAsync` is gone Reviewed By: ltamasi Differential Revision: D45242280 Pulled By: hx235 fbshipit-source-id: 9823e3fbd4e9672efdd31478a2f2cbd68a98bdf5
Summary: **Context/Summary:** `rocksdb.file.read.db.open.micros` is left out in #11288 Pull Request resolved: #11455 Test Plan: - db bench Setup: `./db_bench -db=/dev/shm/testdb/ -statistics=true -benchmarks="fillseq" -key_size=32 -value_size=512 -num=5000 -write_buffer_size=655 -target_file_size_base=655 -disable_auto_compactions=false -compression_type=none -bloom_bits=3` Run: `./db_bench --bloom_bits=3 --use_existing_db=1 --seed=1682546046158958 --partition_index_and_filters=1 --statistics=1 -db=/dev/shm/testdb/ -benchmarks=readrandom -key_size=3200 -value_size=512 -num=0 -write_buffer_size=6550000 -disable_auto_compactions=false -target_file_size_base=6550000 -compression_type=none -file_checksum=1 -cache_size=1` ``` rocksdb.sst.read.micros P50 : 3.979798 P95 : 9.738420 P99 : 19.566667 P100 : 39.000000 COUNT : 2360 SUM : 12148 rocksdb.file.read.flush.micros P50 : 0.000000 P95 : 0.000000 P99 : 0.000000 P100 : 0.000000 COUNT : 0 SUM : 0 rocksdb.file.read.compaction.micros P50 : 0.000000 P95 : 0.000000 P99 : 0.000000 P100 : 0.000000 COUNT : 0 SUM : 0 rocksdb.file.read.db.open.micros P50 : 3.979798 P95 : 9.738420 P99 : 19.566667 P100 : 39.000000 COUNT : 2360 SUM : 12148 ``` Reviewed By: ajkr Differential Revision: D45951934 Pulled By: hx235 fbshipit-source-id: 6c88639dc1b10d98ecccc963ce32a8800495f55b
Summary: **Context/Summary:** - StopWatch enable stats even when `StatsLevel::kExceptTimers` is set. It's a harmless bug though since `reportTimeToHistogram()` will not report it anyway according to https://github.com/facebook/rocksdb/blob/main/include/rocksdb/statistics.h#L705 - #11288 should have removed logics of setting `record_read_stats = !for_compaction` as we don't differentiate `RandomAccessFileReader`'s stats behavior based on compaction or not (instead we now report stats of different IO activities including compaction to different stats). Fixing this should report more compaction related file read micros that aren't reported previously due to `for_compaction==true` Pull Request resolved: #11474 Test Plan: - DB bench pre vs post fix with small max_open_files Setup command `./db_ bench -db=/dev/shm/testdb/ -statistics=true -benchmarks=fillseq -key_size=32 -value_size=512 -num=5000 -write_buffer_size=655 -target_file_size_base=655 -disable_auto_compactions=true -compression_type=none -bloom_bits=3` Run command `./db_bench --open_files=1 -use_existing_db=true -db=/dev/shm/testdb2/ -statistics=true -benchmarks=compactall -key_size=32 -value_size=512 -num=5000 -write_buffer_size=655 -target_file_size_base=655 -disable_auto_compactions=true -compression_type=none -bloom_bits=3` Pre-fix ``` rocksdb.sst.read.micros P50 : 2.056175 P95 : 4.647739 P99 : 8.948475 P100 : 25.000000 COUNT : 4451 SUM : 12827 rocksdb.file.read.flush.micros P50 : 0.000000 P95 : 0.000000 P99 : 0.000000 P100 : 0.000000 COUNT : 0 SUM : 0 rocksdb.file.read.compaction.micros P50 : 2.057397 P95 : 4.625253 P99 : 8.749474 P100 : 25.000000 COUNT : 4382 SUM : 12608 rocksdb.file.read.db.open.micros P50 : 1.985294 P95 : 9.100000 P99 : 13.000000 P100 : 13.000000 COUNT : 69 SUM : 219 ``` Post-fix (with a higher `rocksdb.file.read.compaction.micros` count) ``` rocksdb.sst.read.micros P50 : 1.858968 P95 : 3.653086 P99 : 5.968000 P100 : 21.000000 COUNT : 3548 SUM : 9119 rocksdb.file.read.flush.micros P50 : 0.000000 P95 : 0.000000 P99 : 0.000000 P100 : 0.000000 COUNT : 0 SUM : 0 rocksdb.file.read.compaction.micros P50 : 1.857027 P95 : 3.627614 P99 : 5.738621 P100 : 21.000000 COUNT : 3479 SUM : 8904 rocksdb.file.read.db.open.micros P50 : 2.000000 P95 : 6.733333 P99 : 11.000000 P100 : 11.000000 COUNT : 69 SUM : 215 ``` - CI Reviewed By: ajkr Differential Revision: D46137221 Pulled By: hx235 fbshipit-source-id: e5b4ee7001af26f2ee0377bc6334f43b2a527388
…+ misc (#11444) Summary: **Context/Summary:** - Similar to #11288 but for user read such as `Get(), MultiGet(), DBIterator::XXX(), Verify(File)Checksum()`. - For this, I refactored some user-facing `MultiGet` calls in `TransactionBase` and various types of `DB` so that it does not call a user-facing `Get()` but `GetImpl()` for passing the `ReadOptions::io_activity` check (see PR conversation) - New user read stats breakdown are guarded by `kExceptDetailedTimers` since measurement shows they have 4-5% regression to the upstream/main. - Misc - More refactoring: with #11288, we complete passing `ReadOptions/IOOptions` to FS level. So we can now replace the previously [added](#9424) `rate_limiter_priority` parameter in `RandomAccessFileReader`'s `Read/MultiRead/Prefetch()` with `IOOptions::rate_limiter_priority` - Also, `ReadAsync()` call time is measured in `SST_READ_MICRO` now Pull Request resolved: #11444 Test Plan: - CI fake db crash/stress test - Microbenchmarking **Build** `make clean && ROCKSDB_NO_FBCODE=1 DEBUG_LEVEL=0 make -jN db_basic_bench` - google benchmark version: google/benchmark@604f6fd - db_basic_bench_base: upstream - db_basic_bench_pr: db_basic_bench_base + this PR - asyncread_db_basic_bench_base: upstream + [db basic bench patch for IteratorNext](main...hx235:rocksdb:micro_bench_async_read) - asyncread_db_basic_bench_pr: asyncread_db_basic_bench_base + this PR **Test** Get ``` TEST_TMPDIR=/dev/shm ./db_basic_bench_{null_stat|base|pr} --benchmark_filter=DBGet/comp_style:0/max_data:134217728/per_key_size:256/enable_statistics:1/negative_query:0/enable_filter:0/mmap:1/threads:1 --benchmark_repetitions=1000 ``` Result ``` Coming soon ``` AsyncRead ``` TEST_TMPDIR=/dev/shm ./asyncread_db_basic_bench_{base|pr} --benchmark_filter=IteratorNext/comp_style:0/max_data:134217728/per_key_size:256/enable_statistics:1/async_io:1/include_detailed_timers:0 --benchmark_repetitions=1000 > syncread_db_basic_bench_{base|pr}.out ``` Result ``` Base: 1956,1956,1968,1977,1979,1986,1988,1988,1988,1990,1991,1991,1993,1993,1993,1993,1994,1996,1997,1997,1997,1998,1999,2001,2001,2002,2004,2007,2007,2008, PR (2.3% regression, due to measuring `SST_READ_MICRO` that wasn't measured before): 1993,2014,2016,2022,2024,2027,2027,2028,2028,2030,2031,2031,2032,2032,2038,2039,2042,2044,2044,2047,2047,2047,2048,2049,2050,2052,2052,2052,2053,2053, ``` Reviewed By: ajkr Differential Revision: D45918925 Pulled By: hx235 fbshipit-source-id: 58a54560d9ebeb3a59b6d807639692614dad058a
Summary: ## Context/Summary Similar to #11288, #11444, categorizing SST/blob file write according to different io activities allows more insight into the activity. For that, this PR does the following: - Tag different write IOs by passing down and converting WriteOptions to IOOptions - Add new SST_WRITE_MICROS histogram in WritableFileWriter::Append() and breakdown FILE_WRITE_{FLUSH|COMPACTION|DB_OPEN}_MICROS Some related code refactory to make implementation cleaner: - Blob stats - Replace high-level write measurement with low-level WritableFileWriter::Append() measurement for BLOB_DB_BLOB_FILE_WRITE_MICROS. This is to make FILE_WRITE_{FLUSH|COMPACTION|DB_OPEN}_MICROS include blob file. As a consequence, this introduces some behavioral changes on it, see HISTORY and db bench test plan below for more info. - Fix bugs where BLOB_DB_BLOB_FILE_SYNCED/BLOB_DB_BLOB_FILE_BYTES_WRITTEN include file failed to sync and bytes failed to write. - Refactor WriteOptions constructor for easier construction with io_activity and rate_limiter_priority - Refactor DBImpl::~DBImpl()/BlobDBImpl::Close() to bypass thread op verification - Build table - TableBuilderOptions now includes Read/WriteOpitons so BuildTable() do not need to take these two variables - Replace the io_priority passed into BuildTable() with TableBuilderOptions::WriteOpitons::rate_limiter_priority. Similar for BlobFileBuilder. This parameter is used for dynamically changing file io priority for flush, see #9988 for more - Update ThreadStatus::FLUSH_BYTES_WRITTEN to use io_activity to track flush IO in flush job and db open instead of io_priority ## Test ### db bench Flush ``` ./db_bench --statistics=1 --benchmarks=fillseq --num=100000 --write_buffer_size=100 rocksdb.sst.write.micros P50 : 1.830863 P95 : 4.094720 P99 : 6.578947 P100 : 26.000000 COUNT : 7875 SUM : 20377 rocksdb.file.write.flush.micros P50 : 1.830863 P95 : 4.094720 P99 : 6.578947 P100 : 26.000000 COUNT : 7875 SUM : 20377 rocksdb.file.write.compaction.micros P50 : 0.000000 P95 : 0.000000 P99 : 0.000000 P100 : 0.000000 COUNT : 0 SUM : 0 rocksdb.file.write.db.open.micros P50 : 0.000000 P95 : 0.000000 P99 : 0.000000 P100 : 0.000000 COUNT : 0 SUM : 0 ``` compaction, db oopen ``` Setup: ./db_bench --statistics=1 --benchmarks=fillseq --num=10000 --disable_auto_compactions=1 -write_buffer_size=100 --db=../db_bench Run:./db_bench --statistics=1 --benchmarks=compact --db=../db_bench --use_existing_db=1 rocksdb.sst.write.micros P50 : 2.675325 P95 : 9.578788 P99 : 18.780000 P100 : 314.000000 COUNT : 638 SUM : 3279 rocksdb.file.write.flush.micros P50 : 0.000000 P95 : 0.000000 P99 : 0.000000 P100 : 0.000000 COUNT : 0 SUM : 0 rocksdb.file.write.compaction.micros P50 : 2.757353 P95 : 9.610687 P99 : 19.316667 P100 : 314.000000 COUNT : 615 SUM : 3213 rocksdb.file.write.db.open.micros P50 : 2.055556 P95 : 3.925000 P99 : 9.000000 P100 : 9.000000 COUNT : 23 SUM : 66 ``` blob stats - just to make sure they aren't broken by this PR ``` Integrated Blob DB Setup: ./db_bench --enable_blob_files=1 --statistics=1 --benchmarks=fillseq --num=10000 --disable_auto_compactions=1 -write_buffer_size=100 --db=../db_bench Run:./db_bench --enable_blob_files=1 --statistics=1 --benchmarks=compact --db=../db_bench --use_existing_db=1 pre-PR: rocksdb.blobdb.blob.file.write.micros P50 : 7.298246 P95 : 9.771930 P99 : 9.991813 P100 : 16.000000 COUNT : 235 SUM : 1600 rocksdb.blobdb.blob.file.synced COUNT : 1 rocksdb.blobdb.blob.file.bytes.written COUNT : 34842 post-PR: rocksdb.blobdb.blob.file.write.micros P50 : 2.000000 P95 : 2.829360 P99 : 2.993779 P100 : 9.000000 COUNT : 707 SUM : 1614 - COUNT is higher and values are smaller as it includes header and footer write - COUNT is 3X higher due to each Append() count as one post-PR, while in pre-PR, 3 Append()s counts as one. See https://github.com/facebook/rocksdb/pull/11910/files#diff-32b811c0a1c000768cfb2532052b44dc0b3bf82253f3eab078e15ff201a0dabfL157-L164 rocksdb.blobdb.blob.file.synced COUNT : 1 (stay the same) rocksdb.blobdb.blob.file.bytes.written COUNT : 34842 (stay the same) ``` ``` Stacked Blob DB Run: ./db_bench --use_blob_db=1 --statistics=1 --benchmarks=fillseq --num=10000 --disable_auto_compactions=1 -write_buffer_size=100 --db=../db_bench pre-PR: rocksdb.blobdb.blob.file.write.micros P50 : 12.808042 P95 : 19.674497 P99 : 28.539683 P100 : 51.000000 COUNT : 10000 SUM : 140876 rocksdb.blobdb.blob.file.synced COUNT : 8 rocksdb.blobdb.blob.file.bytes.written COUNT : 1043445 post-PR: rocksdb.blobdb.blob.file.write.micros P50 : 1.657370 P95 : 2.952175 P99 : 3.877519 P100 : 24.000000 COUNT : 30001 SUM : 67924 - COUNT is higher and values are smaller as it includes header and footer write - COUNT is 3X higher due to each Append() count as one post-PR, while in pre-PR, 3 Append()s counts as one. See https://github.com/facebook/rocksdb/pull/11910/files#diff-32b811c0a1c000768cfb2532052b44dc0b3bf82253f3eab078e15ff201a0dabfL157-L164 rocksdb.blobdb.blob.file.synced COUNT : 8 (stay the same) rocksdb.blobdb.blob.file.bytes.written COUNT : 1043445 (stay the same) ``` ### Rehearsal CI stress test Trigger 3 full runs of all our CI stress tests ### Performance Flush ``` TEST_TMPDIR=/dev/shm ./db_basic_bench_pre_pr --benchmark_filter=ManualFlush/key_num:524288/per_key_size:256 --benchmark_repetitions=1000 -- default: 1 thread is used to run benchmark; enable_statistics = true Pre-pr: avg 507515519.3 ns 497686074,499444327,500862543,501389862,502994471,503744435,504142123,504224056,505724198,506610393,506837742,506955122,507695561,507929036,508307733,508312691,508999120,509963561,510142147,510698091,510743096,510769317,510957074,511053311,511371367,511409911,511432960,511642385,511691964,511730908, Post-pr: avg 511971266.5 ns, regressed 0.88% 502744835,506502498,507735420,507929724,508313335,509548582,509994942,510107257,510715603,511046955,511352639,511458478,512117521,512317380,512766303,512972652,513059586,513804934,513808980,514059409,514187369,514389494,514447762,514616464,514622882,514641763,514666265,514716377,514990179,515502408, ``` Compaction ``` TEST_TMPDIR=/dev/shm ./db_basic_bench_{pre|post}_pr --benchmark_filter=ManualCompaction/comp_style:0/max_data:134217728/per_key_size:256/enable_statistics:1 --benchmark_repetitions=1000 -- default: 1 thread is used to run benchmark Pre-pr: avg 495346098.30 ns 492118301,493203526,494201411,494336607,495269217,495404950,496402598,497012157,497358370,498153846 Post-pr: avg 504528077.20, regressed 1.85%. "ManualCompaction" include flush so the isolated regression for compaction should be around 1.85-0.88 = 0.97% 502465338,502485945,502541789,502909283,503438601,504143885,506113087,506629423,507160414,507393007 ``` Put with WAL (in case passing WriteOptions slows down this path even without collecting SST write stats) ``` TEST_TMPDIR=/dev/shm ./db_basic_bench_pre_pr --benchmark_filter=DBPut/comp_style:0/max_data:107374182400/per_key_size:256/enable_statistics:1/wal:1 --benchmark_repetitions=1000 -- default: 1 thread is used to run benchmark Pre-pr: avg 3848.10 ns 3814,3838,3839,3848,3854,3854,3854,3860,3860,3860 Post-pr: avg 3874.20 ns, regressed 0.68% 3863,3867,3871,3874,3875,3877,3877,3877,3880,3881 ``` Pull Request resolved: #11910 Reviewed By: ajkr Differential Revision: D49788060 Pulled By: hx235 fbshipit-source-id: 79e73699cda5be3b66461687e5147c2484fc5eff
Context:
The existing stat rocksdb.sst.read.micros does not reflect each of compaction and flush cases but aggregate them, which is not so helpful for us to understand IO read behavior of each of them.
Summary
StopWatch
andRandomAccessFileReader
to recordrocksdb.sst.read.micros
androcksdb.file.{flush/compaction}.read.micros
RandomAccessFileReader
ReadOptions/IOOptions::io_activity
; PassReadOptions
through paths under db open, flush and compaction to where we can prepareIOOptions
and pass it toRandomAccessFileReader
thread_status_util
for assertion inDbStressFSWrapper
for continuous testing on we are passing correctio_activity
under db open, flush and compactionTest:
HistogramStat::Add
only guarantees atomic not accuracy across threads.Read
SETUP: db with 900 files
TEST: run till convergence
Pre-change
readrandom [AVG 60 runs] : 21568 (± 248) ops/sec
Post-change (no regression, -0.3%)
readrandom [AVG 60 runs] : 21486 (± 236) ops/sec
Compaction/Flush
TEST: run till convergence
Pre-change
fillseq [AVG 46 runs] : 1391 (± 214) ops/sec; 0.7 (± 0.1) MB/sec
Post-change (no regression, ~-0.4%)
fillseq [AVG 46 runs] : 1385 (± 216) ops/sec; 0.7 (± 0.1) MB/sec