Issue 217: Resolve check notes (#219)

* Add README.Rmd to Rbuildignore * Move bayesplot and posterior to Suggests rather than Imports * Add tidyr (use in vignette) * Perhaps do need posterior -- confusing checks * Add explicit stats::update
epinowcast · Aug 2, 2024 · 9d0d677 · 9d0d677
1 parent a4ab006
commit 9d0d677
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Showing 3 changed files with 7 additions and 4 deletions.
diff --git a/.Rbuildignore b/.Rbuildignore
@@ -13,3 +13,4 @@
 ^pkgdown$
 ^doc$
 ^Meta$
+README.Rmd
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -28,14 +28,13 @@ Imports:
     cmdstanr,
     data.table,
     ggplot2,
-    posterior,
     purrr,
     ggridges,
     stats,
     cli,
     checkmate,
     rstan,
-    bayesplot
+    posterior
 Suggests:
     bookdown,
     testthat (>= 3.0.0),
@@ -45,7 +44,9 @@ Suggests:
     dplyr,
     knitr,
     roxyglobals,
-    tibble
+    tibble,
+    bayesplot,
+    tidyr
 Remotes:
     stan-dev/cmdstanr,
     Rdatatable/data.table,

diff --git a/R/latent_individual.R b/R/latent_individual.R
@@ -149,13 +149,14 @@ epidist_family.epidist_latent_individual <- function(data,
 #' @method epidist_formula epidist_latent_individual
 #' @family latent_individual
 #' @importFrom brms brmsterms
+#' @importFrom stats update
 #' @export
 epidist_formula.epidist_latent_individual <- function(data, family, formula,
                                                       ...) {
   epidist_validate(data)
   formula <- brms:::validate_formula(formula, data = data, family = family)
 
-  formula <- update(
+  formula <- stats::update(
     formula, delay_central | vreal(obs_t, pwindow_upr, swindow_upr) ~ .
   )
-Original file line number
+Diff line change
@@ Expand Up / @@ -13,3 +13,4 @@ @@
     ^pkgdown$
     ^doc$
     ^Meta$
+    README.Rmd