Code

merge to update branch#72

Code

Merged

nikosbosse merged 71 commits intoadd_mixture_modelepiforecasts/EpiSoon:add_mixture_modelfrom masterepiforecasts/EpiSoon:masterCopy head branch name to clipboardMay 15, 2020

+3,626-1,530

Commits

Commits on Apr 27, 2020

• created test directory and dependency (Suggests) to testthat

  

  Nathalie Vialaneix

  committed
  6012843

• Start unit tests for group3 functions defined by Nath

  

  andreamrau

  authored and

  Nathalie Vialaneix

  committed
  288135e

• created a test file for "evaluate_model"

  

  Nathalie Vialaneix

  committed
  ec8f3db

• forecast_cases() unit test draft

  

  Sylvain Mareschal

  authored and

  Nathalie Vialaneix

  committed
  7ed4787

• fixed a typo in tests of "forecast_cases"

  

  Nathalie Vialaneix

  committed
  cd83999

• tests(evaluate model): improved verbose

  

  Nathalie Vialaneix

  committed
  8f99d29

• added a test file for 'compare_models'

  

  Nathalie Vialaneix

  committed
  b008998

• added a test file for 'compare_timeseries'

  

  Nathalie Vialaneix

  committed
  08e1245

• added a test file for 'summarise_scores'

  

  Nathalie Vialaneix

  committed
  6cdf346

• Add forecast_rt tests

  

  andreamrau

  authored and

  Nathalie Vialaneix

  committed
  92ceb06

• added the tests for the group 1 functions

  

  achateigner

  authored and

  Nathalie Vialaneix

  committed
  7a1d5c6

• Add iterative_rt_forecast tests

  

  andreamrau

  authored and

  Nathalie Vialaneix

  committed
  2d0dd7e

• corrected the as_tibble bug

  

  achateigner

  authored and

  Nathalie Vialaneix

  committed
  b6b6583

• added a test file for 'plot_forecast'

  

  Nathalie Vialaneix

  committed
  60a9757

• added a test for 'plot_forecast_evaluation'

  

  Nathalie Vialaneix

  committed
  087025a

• Add score_forecast tests

  

  andreamrau

  authored and

  Nathalie Vialaneix

  committed
  43dabb8

• Add score_case_forecast tests

  

  andreamrau

  authored and

  Nathalie Vialaneix

  committed
  524b2dd

• Unit tests group 2

  

  maressyl

  authored and

  Nathalie Vialaneix

  committed
  32a92a4

• fixed a bug in test_plot_forecast

  

  Nathalie Vialaneix

  committed
  f607575

• changed a file name to avoid possible problems with brackets

  

  Nathalie Vialaneix

  committed
  a13bbba

• split testGroup1 into separated files + translated comments in English

  

  Nathalie Vialaneix

  committed
  b752f73

• commented lines that possibly make the tests fail depending on randomness

  

  Nathalie Vialaneix

  committed
  2425fae

• move (almost) all comments in tests to github issues

  

  Nathalie Vialaneix

  committed
  62ecdbd

• Fix bugs in test_score_forecast and test_score_case_forecast

  andreamrau

  committed
  5d10adc

Commits on Apr 28, 2020

• added codecov support

  

  Nathalie Vialaneix

  committed
  fa71811

Commits on Apr 29, 2020

• Aurelien: changed the way I tested the results, as long as I cannot fix the seed. I left the previous tests commented to be able to get them back later.

  

  Aurélien Chateigner

  committed
  7c46479

Commits on Apr 30, 2020

• added first hack at brms wrapper

  medewitt

  committed
  97f9dfb

• added github actions

  medewitt

  committed
  56c0c61

• minor additions in tests (testing number of rows in outputs)

  

  Nathalie Vialaneix

  committed
  dc236e1

• removed codecov check

  

  Nathalie Vialaneix

  committed
  cd44d99

• fixed missing globals and missing brms arguments in example

  medewitt

  committed
  4ba5c7a

• pesky mac

  medewitt

  committed
  457067d

• Update check-full.yaml

  Show description for 363e47e
  medewitt

  authored
  363e47e

• update R versions

  Show description for cb3601e
  medewitt

  authored
  cb3601e

Commits on May 2, 2020

• updated docs to allow links to packages described in function descriptions

  medewitt

  committed
  637b224

• fixed links in some of the documentation. additionally moved brms and tidybayes as a suggests and added helper function to detect if they are present before running the model and stopping on error.…

  Show description for c79e495
  medewitt

  committed
  c79e495

• don't run brms example

  medewitt

  committed
  9bc4c4c

• remove import of brms functions to pass checks

  medewitt

  committed
  70c434e

• I think I have all the dependency stuff figured out with move to suggests

  medewitt

  committed
  9e30ec0

• fixed missing link in documentation. seems to pass all checks locally

  medewitt

  committed
  143bafd

Commits on May 4, 2020

• Merge pull request #45 from tuxette/testthat

  Show description for 44a506b
  seabbs

  authored
  44a506b

Commits on May 5, 2020

• removed codecov check

  

  Nathalie Vialaneix

  committed
  dd10d5a

• Merge branch 'testthat'

  

  Nathalie Vialaneix

  committed
  ea104e8

• added contributors in DESCRIPTION

  

  Nathalie Vialaneix

  committed
  871140a

Commits on May 14, 2020

• Merge pull request #48 from tuxette/master

  Show description for 6d0ed94
  seabbs

  authored
  6d0ed94

• Merge branch 'master' into master

  seabbs

  authored
  4381eed

• Merge pull request #46 from medewitt/master

  Show description for 83ef4b0
  seabbs

  authored
  83ef4b0

• Update DESCRIPTION

  seabbs

  authored
  6fe477d

• Update DESCRIPTION

  seabbs

  authored
  7d37614

• Merge pull request #1 from epiforecasts/master

  Show description for 84b8ac3
  medewitt

  authored
  84b8ac3

• first part of the infrastrture. Need the gh-pages orphan branch

  

  Michael DeWitt

  committed
  92bb7a1

• added my credentials as contributor

  

  Michael DeWitt

  committed
  c2aadb4

Commits on May 15, 2020

• Update DESCRIPTION

  Show description for 405c3dd
  seabbs

  authored
  405c3dd

• move bsts to suggests

  seabbs

  committed
  f0b3962

• move all fable to suggests

  seabbs

  committed
  44292ba

• tests passing

  seabbs

  committed
  87f4e34

• first pass at forecastHybrid

  seabbs

  committed
  8d62021

• Merge pull request #61 from medewitt/add-md

  Show description for dde67e4
  seabbs

  authored
  dde67e4

• Merge pull request #62 from medewitt/add-gha

  Show description for bdd0a14
  seabbs

  authored
  bdd0a14

• simple sampler for forecastHybrid

  seabbs

  committed
  aa03f6c

• update readme

  seabbs

  committed
  576ba3c

• Update forecastHybrid_model.R

  seabbs

  authored
  3daa362

• Merge pull request #63 from epiforecasts/add_forecastHybrid

  Show description for 3b1f135
  seabbs

  authored
  3b1f135

• Merge pull request #65 from epiforecasts/update_readme

  Show description for 05983ae
  seabbs

  authored
  05983ae

• changed to work with the mean calculated by forecastHybrid instead of a mean calculated from CI

  nikosbosse

  committed
  04da868

• Merge pull request #66 from epiforecasts/change_mean_forecastHybrid

  Show description for d998d51
  seabbs

  authored
  d998d51

• first attempt at blocking hybrid from usign multplec oers

  seabbs

  committed
  e3cdb3e

• Updated check_suggest to allow for custom dev messages for packages not on CRAN

  nikosbosse

  committed
  0b72e13

• Merge pull request #67 from epiforecasts/update_check_suggest

  Show description for e1234f4
  seabbs

  authored
  e1234f4

• added new ensemble method

  seabbs

  committed
  c478eb5

• Merge pull request #69 from epiforecasts/stop_parallel_hybrid

  Show description for 5e8d2ec
  seabbs

  authored
  5e8d2ec