Implement nox #51
Open
Implement nox #51
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
…rrays Basically what is happening here is that the first amplicon's `include_idxs` and `exclude_idxs` was always a numpy array, and the following amplicon's were cloned off of it and were vanilla Python lists. All of the other arrays in this file have commas separating them, but notice that these two columns didn't (but they do now).
|
@trevormartinj7 when you get a minute, could you try to run the tests? There are some new dependencies and instructions in the README. (let me know if the instructions don't make sense or need to be revised) |
- use pip install --no-build-isolation
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
This PR replaces the
Makefilewithnox. This allows us to have separate conda environments for different packages and cleans up the declaration of the integration tests.