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Per #2281, adding new files for testing
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| # | ||
| # Specify version of gcc docker image to obtain | ||
| # | ||
| ARG GCC_VERSION=9.5.0 | ||
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| # | ||
| # This Dockerfile checks out MET from GitHub and compiles the specified branch or tag from source. | ||
| # | ||
| ARG SOURCE_BRANCH=feature_2281_linker_actions | ||
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| FROM gcc:${GCC_VERSION} | ||
| MAINTAINER Julie Prestopnik <[email protected]> | ||
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| # | ||
| # Set up the environment needed for MET | ||
| # | ||
|
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| # | ||
| # Define the compilers. | ||
| # | ||
| ENV CC /usr/local/bin/gcc | ||
| ENV CXX /usr/local/bin/g++ | ||
| ENV FC /usr/local/bin/gfortran | ||
| ENV F77 /usr/local/bin/gfortran | ||
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| # | ||
| # Define package URL's. | ||
| # | ||
| ENV HDF4_URL http://www.hdfgroup.org/ftp/HDF/releases/HDF4.2r3/src/HDF4.2r3.tar.gz | ||
| ENV HDFEOS_URL https://dtcenter.ucar.edu/dfiles/code/METplus/MET/docker_data/HDF-EOS2.16v1.00.tar.Z | ||
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| ENV HDF5_URL https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/hdf5-1.8.18/src/hdf5-1.8.18.tar.gz | ||
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| ENV NETCDF4C_URL https://github.com/Unidata/netcdf-c/archive/v4.4.1.1.zip | ||
| ENV NETCDF4CXX_URL https://github.com/Unidata/netcdf-cxx4/archive/v4.3.0.tar.gz | ||
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| ENV BUFRLIB_URL https://dtcenter.ucar.edu/dfiles/code/METplus/MET/docker_data/BUFRLIB_v10-2-3.tar | ||
| ENV GSFONT_URL https://dtcenter.ucar.edu/dfiles/code/METplus/MET/docker_data/ghostscript-fonts-std-8.11.tar.gz | ||
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| # | ||
| # Install the required packages. | ||
| # | ||
| RUN apt-get update -y | ||
| RUN apt-get install -y libpng-dev zlib1g-dev | ||
| RUN apt-get install -y tcsh ksh | ||
| RUN apt-get install -y flex bison | ||
| RUN apt-get install -y libgslcblas0 libgsl23 grads libgrib2c-dev | ||
| RUN apt-get install -y gv ncview | ||
| RUN apt-get install -y python3-pip | ||
| RUN pip3 install --upgrade pip | ||
| RUN python3 -m pip install numpy xarray netCDF4 | ||
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| # | ||
| # Set the working directory. | ||
| # | ||
| WORKDIR /met | ||
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| # | ||
| # Setup the environment for interactive bash/csh container shells. | ||
| # | ||
| RUN echo export MET_BASE=/usr/local/share/met >> /etc/bashrc \ | ||
| && echo setenv MET_BASE /usr/local/share/met >> /etc/csh.cshrc \ | ||
| && echo export MET_FONT_DIR=/usr/local/share/met/fonts >> /etc/bashrc \ | ||
| && echo setenv MET_FONT_DIR /usr/local/share/met/fonts >> /etc/csh.cshrc \ | ||
| && echo export RSCRIPTS_BASE=/usr/local/share/met/Rscripts >> /etc/bashrc \ | ||
| && echo setenv RSCRIPTS_BASE /usr/local/share/met/Rscripts >> /etc/csh.cshrc \ | ||
| && echo export LD_LIBRARY_PATH=/usr/local/lib >> /etc/bashrc \ | ||
| && echo setenv LD_LIBRARY_PATH /usr/local/lib >> /etc/csh.cshrc | ||
| ENV LD_LIBRARY_PATH /usr/local/lib | ||
| ENV MET_FONT_DIR /usr/local/share/met/fonts | ||
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| # | ||
| # Download and install BUFRLIB. | ||
| # | ||
| RUN mkdir -p /met/logs \ | ||
| && mkdir -p /met/external_libs/BUFRLIB \ | ||
| && cd /met/external_libs/BUFRLIB \ | ||
| && echo "Downloading BUFRLIB from ${BUFRLIB_URL}" \ | ||
| && curl -SL ${BUFRLIB_URL} | tar xC /met/external_libs/BUFRLIB \ | ||
| && cat preproc.sh | sed 's/cpp /cpp -traditional-cpp /g' > preproc_patch.sh \ | ||
| && chmod +x preproc_patch.sh \ | ||
| && LOG_FILE=/met/logs/BUFRLIB_build.log \ | ||
| && echo "Compiling BUFRLIB and writing log file ${LOG_FILE}" \ | ||
| && ./preproc_patch.sh *.F > ${LOG_FILE} \ | ||
| && ${CC} -c -DUNDERSCORE *.c >> ${LOG_FILE} \ | ||
| && ${FC} -c -fno-second-underscore *.f >> ${LOG_FILE} \ | ||
| && ar crv libbufr.a *.o >> ${LOG_FILE} \ | ||
| && rm -f /usr/local/lib/libbufr.a \ | ||
| && cp *.a /usr/local/lib \ | ||
| && cd /met/external_libs \ | ||
| && rm -rf BUFRLIB | ||
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| # | ||
| # Download and install HDF5. | ||
| # | ||
|
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||
| RUN mkdir -p /met/external_libs/hdf5 \ | ||
| && cd /met/external_libs/hdf5 \ | ||
| && echo "Downloading hdf5-1.8.18 from ${HDF5_URL}" \ | ||
| && wget ${HDF5_URL} \ | ||
| && tar -xzf hdf5-1.8.18.tar.gz \ | ||
| && cd hdf5-1.8.18 \ | ||
| && LOG_FILE=/met/logs/hdf5-1.8.18_configure.log \ | ||
| && echo "Configuring hdf5-1.8.18 and writing log file ${LOG_FILE}" \ | ||
| && ./configure --prefix=/usr/local CFLAGS=-fPIC CXXFLAGS=-fPIC FFLAGS=-fPIC > ${LOG_FILE} \ | ||
| && LOG_FILE=/met/logs/hdf5-1.8.18_make_install.log \ | ||
| && echo "Compiling hdf5-1.8.18 and writing log file ${LOG_FILE}" \ | ||
| && make install > ${LOG_FILE} \ | ||
| && cd /met/external_libs \ | ||
| && rm -rf hdf5 | ||
|
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| # | ||
| # Download and install NetCDF4 (C and C++). | ||
| # | ||
|
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||
| RUN mkdir -p /met/external_libs/netcdf \ | ||
| && cd /met/external_libs/netcdf \ | ||
| && echo "Downloading netcdf-c-4.4.1.1 from ${NETCDF4C_URL}" \ | ||
| && wget ${NETCDF4C_URL} \ | ||
| && unzip v4.4.1.1.zip \ | ||
| && cd netcdf-c-4.4.1.1 \ | ||
| && LOG_FILE=/met/logs/netcdf-c-4.4.1.1_configure.log \ | ||
| && echo "Configuring netcdf-c-4.4.1.1 and writing log file ${LOG_FILE}" \ | ||
| && ./configure --prefix=/usr/local LDFLAGS=-L/usr/local/lib:/usr/lib/x86_64-linux-gnu/ CPPFLAGS=-I/usr/local/include:/usr/include LIBS="${LIBS} -lhdf5_hl -lhdf5 -lz" > ${LOG_FILE} \ | ||
| && LOG_FILE=/met/logs/netcdf-c-4.4.1.1_make_install.log \ | ||
| && echo "Compiling netcdf-c-4.4.1.1 and writing log file ${LOG_FILE}" \ | ||
| && make install > ${LOG_FILE} \ | ||
| && echo "Downloading from ${NETCDF4CXX_URL}" \ | ||
| && cd /met/external_libs/netcdf \ | ||
| && wget ${NETCDF4CXX_URL} \ | ||
| && tar -xzf v4.3.0.tar.gz \ | ||
| && cd netcdf-cxx4-4.3.0 \ | ||
| && LOG_FILE=/met/logs/netcdf-cxx4-4.3.0_configure.log \ | ||
| && echo "Configuring netcdf-cxx4-4.3.0 and writing log file ${LOG_FILE}" \ | ||
| && ./configure --prefix=/usr/local > ${LOG_FILE} \ | ||
| && LOG_FILE=/met/logs/netcdf-cxx4-4.3.0_make_install.log \ | ||
| && echo "Compiling netcdf-cxx4-4.3.0 and writing log file ${LOG_FILE}" \ | ||
| && make install > ${LOG_FILE} \ | ||
| && cd /met/external_libs \ | ||
| && rm -rf netcdf | ||
|
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| # | ||
| # Download and install HDF4 and HDFEOS. | ||
| # | ||
| RUN echo "Downloading HDF4.2r3 from ${HDF4_URL}" \ | ||
| && curl -SL ${HDF4_URL} | tar zxC /met/external_libs \ | ||
| && cd /met/external_libs/HDF4.2r3 \ | ||
| && LOG_FILE=/met/logs/HDF4.2r3_configure.log \ | ||
| && echo "Configuring HDF4.2r3 and writing log file ${LOG_FILE}" \ | ||
| && ./configure --prefix=/usr/local/hdf --disable-netcdf > ${LOG_FILE} \ | ||
| && cat mfhdf/hdiff/Makefile | sed 's/LIBS = -ljpeg -lz/LIBS = -ljpeg -lz -lm/g' > Makefile_NEW \ | ||
| && mv -f Makefile_NEW mfhdf/hdiff/Makefile \ | ||
| && LOG_FILE=/met/logs/HDF4.2r3_make_install.log \ | ||
| && echo "Compiling HDF4.2r3 and writing log file ${LOG_FILE}" \ | ||
| && make install > ${LOG_FILE} \ | ||
| && echo "Downloading hdfeos from ${HDFEOS_URL}" \ | ||
| && curl -SL ${HDFEOS_URL} | tar zxC /met/external_libs \ | ||
| && cd /met/external_libs/hdfeos \ | ||
| && LOG_FILE=/met/logs/hdfeos_configure.log \ | ||
| && echo "Configuring hdfeos and writing log file ${LOG_FILE}" \ | ||
| && ./configure --prefix=/usr/local/hdfeos --with-hdf4=/usr/local/hdf CC=/usr/local/hdf/bin/h4cc > ${LOG_FILE} \ | ||
| && LOG_FILE=/met/logs/hdfeos_make_install.log \ | ||
| && echo "Compiling hdfeos and writing log file ${LOG_FILE}" \ | ||
| && make install > ${LOG_FILE} \ | ||
| && mkdir /usr/local/hdfeos/include \ | ||
| && cp include/*.h /usr/local/hdfeos/include/. \ | ||
| && cd /met/external_libs \ | ||
| && rm -rf HDF4.2r3 hdfeos | ||
|
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| RUN echo "Downloading GhostScript fonts from ${GSFONT_URL} into /usr/local/share/met" \ | ||
| && mkdir -p /usr/local/share/met \ | ||
| && curl -SL ${GSFONT_URL} | tar zxC /usr/local/share/met | ||
|
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| # | ||
| # SOURCE_BRANCH is not defined when built via Docker Hub. | ||
| # | ||
| RUN if [ "x${SOURCE_BRANCH}" = "x" ]; then \ | ||
| echo "ERROR: SOURCE_BRANCH undefined! Rebuild with \"--build-arg SOURCE_BRANCH={branch name}\""; \ | ||
| exit 1; \ | ||
| else \ | ||
| echo "Build Argument SOURCE_BRANCH=${SOURCE_BRANCH}"; \ | ||
| fi | ||
|
|
||
| ENV MET_GIT_NAME ${SOURCE_BRANCH} | ||
| ENV MET_REPO_DIR /met/MET-${MET_GIT_NAME} | ||
| ENV MET_GIT_URL https://github.com/dtcenter/MET | ||
| ENV MET_DEVELOPMENT true | ||
|
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| # | ||
| # Set the working directory. | ||
| # | ||
| WORKDIR /met | ||
|
|
||
| # | ||
| # Download and install MET and GhostScript fonts. | ||
| # Delete the MET source code for tagged releases matching "v"*. | ||
| # | ||
| RUN echo "Checking out MET ${MET_GIT_NAME} from ${MET_GIT_URL}" \ | ||
| && git clone ${MET_GIT_URL} ${MET_REPO_DIR} \ | ||
| && cd ${MET_REPO_DIR} \ | ||
| && git checkout ${MET_GIT_NAME} \ | ||
| && internal/scripts/docker/build_met_docker.sh |
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