Update run.sh

Add commands to combine codingGenes-textMining csv files into a single csv
datacommonsorg · Nov 30, 2023 · bf3332f · bf3332f
1 parent 35c27b2
commit bf3332f
Showing 1 changed file with 3 additions and 1 deletion.
diff --git a/scripts/biomedical/diseasesAtJensenLab/run.sh b/scripts/biomedical/diseasesAtJensenLab/run.sh
@@ -10,4 +10,6 @@ curl https://download.jensenlab.org/human_disease_experiments_full.tsv --output
 # runs the script 
 python3 ../format_disease_jensen_lab.py
 
-
+# combine coding genes from textmining into single csv file
+( cat codingGenes-textMining-1.csv; tail -n +2 codingGenes-textMining-2.csv ) > codingGenes-textMining.csv
+rm codingGenes-textMining-*.csv