BUG: Support pandas IntegerArray

docs/history.rst

@@ -4,6 +4,7 @@ History
 Latest
 -------
 - BUG: Update minimize dtype for int64 & int8 support (issue #139)
+- BUG: Support pandas IntegerArray (pull #158)
 
 0.4.2
 -------

geocube/rasterize.py

@@ -1,7 +1,7 @@
 """
 This module contains tools for rasterizing vector data.
 """
-from typing import Optional
+from typing import Optional, Union
 
 import geopandas
 import numpy
@@ -65,7 +65,7 @@ def _minimize_dtype(dtype: numpy.dtype, fill: float) -> numpy.dtype:
 
 def rasterize_image(
     geometry_array: geopandas.GeoSeries,
-    data_values: NDArray,
+    data_values: Union[NDArray, pandas.arrays.IntegerArray],
     geobox: odc.geo.geobox.GeoBox,
     fill: float,
     merge_alg: MergeAlg = MergeAlg.replace,
@@ -80,7 +80,7 @@ def rasterize_image(
     -----------
     geometry_array: geopandas.GeoSeries
         A geometry array of points.
-    data_values: list
+    data_values: Union[NDArray, pandas.arrays.IntegerArray]
         Data values associated with the list of geojson shapes
     geobox: :obj:`odc.geo.geobox.GeoBox`
         Transform of the resulting image.
@@ -110,6 +110,12 @@ def rasterize_image(
         # only numbers can be rasterized
         return None
 
+    if isinstance(data_values, pandas.arrays.IntegerArray):
+        data_values = data_values.to_numpy(
+            dtype=_minimize_dtype(data_values.dtype.numpy_dtype, fill),
+            na_value=fill,
+        )
+
     if filter_nan:
         data_values, geometry_array = _remove_missing_data(data_values, geometry_array)
 

test/integration/api/test_core_integration.py

@@ -3,6 +3,7 @@
 from functools import partial
 
 import geopandas
+import numpy
 import pandas
 import pytest
 import xarray
@@ -857,3 +858,29 @@ def test_rasterize__like_1d():
     )
     assert geom_array.rio.transform() == like.rio.transform()
     assert geom_array.in_geom.shape == (2, 1)
+
+
+@pytest.mark.parametrize(
+    "dtype, expected_dtype",
+    [
+        ("Int32", "int32"),
+        ("Int64", "int64"),
+    ],
+)
+def test_make_geocube__pandas_integer_array(dtype, expected_dtype, tmpdir):
+    soil_data = geopandas.read_file(TEST_INPUT_DATA_DIR / "soil_data_flat.geojson")[
+        ["geometry", "sandtotal_r", "om_r"]
+    ]
+    soil_data["sandtotal_r"] = numpy.round(soil_data["sandtotal_r"] * 100).astype(dtype)
+    soil_data["sandtotal_r"].values[0] = pandas.NA
+
+    out_grid = make_geocube(
+        vector_data=soil_data,
+        output_crs=TEST_GARS_PROJ,
+        geom=json.dumps(mapping(TEST_GARS_POLY)),
+        resolution=[-10, 10],
+        fill=-1,
+    )
+    # test writing to netCDF
+    out_grid.to_netcdf(tmpdir.mkdir("make_geocube_soil") / "soil_grid_flat.nc")
+    assert out_grid.sandtotal_r.dtype.name == expected_dtype