gap v4.12.2 (#68)

automerged PR by conda-forge/automerge-action

recipe/build.sh

@@ -2,50 +2,12 @@
 
 set -x
 
-pushd pkg/CaratInterface
-    tar pzxf carat.tgz
-popd
-
-# Get an updated config.sub, config.guess and libtool
-for f in $(find $SRC_DIR -name config.sub); do
-    cp $BUILD_PREFIX/share/gnuconfig/config.sub $f
-done
-for f in $(find $SRC_DIR -name config.guess); do
-    cp $BUILD_PREFIX/share/gnuconfig/config.guess $f
-done
-for f in $(find $SRC_DIR -name libtool); do
-    cp $BUILD_PREFIX/bin/libtool $f
-done
-for f in $(find $SRC_DIR -name libtool.m4); do
-    cp $BUILD_PREFIX/share/aclocal/libtool.m4 $f
-    pushd $(dirname $(dirname $f))
-        autoreconf -vfi || true
-    popd
-done
-
-autoreconf -vfi
-
 export LD_LIBRARY_PATH="$PREFIX/lib:$LD_LIBRARY_PATH"
 export CFLAGS="-g -O3 -fPIC $CFLAGS"
 rm -f $BUILD_PREFIX/bin/curl-config
 
 # Following is adapted from https://github.com/sagemath/sage
 
-# Delete PDF documentation and misc TeX files
-find doc \( \
-         -name "*.bbl" \
-      -o -name "*.blg" \
-      -o -name "*.aux" \
-      -o -name "*.dvi" \
-      -o -name "*.idx" \
-      -o -name "*.ilg" \
-      -o -name "*.l*" \
-      -o -name "*.m*" \
-      -o -name "*.pdf" \
-      -o -name "*.ind" \
-      -o -name "*.toc" \
-      \) -exec rm {} \;
-
 shopt -s extglob
 
 # Stuff that isn't GAP sources:
@@ -62,8 +24,6 @@ if [[ "$target_platform" != "$build_platform" ]]; then
   fi
 fi
 
-chmod +x configure
-
 ./configure \
     --prefix="$PREFIX" PREFIX="$PREFIX" \
     --with-gmp="$PREFIX" \
@@ -75,41 +35,11 @@ make
 cd pkg
 
 # Disable problematic packages. See https://github.com/conda-forge/gap-feedstock/pull/16
-# anupq, cohomolo because of duplicate symbols
-for GAP_PKG_NAME in anupq cohomolo xgap polymakeinterface;
-do
-    PKG_DIR=`find . -maxdepth 1 -iname "$GAP_PKG_NAME-*" -type d`
-    rm -rf $PKG_DIR
-done
-
-if [[ -d NormalizInterface-1.1.0 ]]; then
-    curl -L -O https://github.com/gap-packages/NormalizInterface/releases/download/v1.2.0/NormalizInterface-1.2.0.tar.gz
-    tar -zxvf NormalizInterface-1.2.0.tar.gz
-    rm NormalizInterface-1.2.0.tar.gz
-    rm -rf NormalizInterface-1.1.0
-fi
-
-ACE_PKG_DIR=`find . -maxdepth 1 -iname "ace-*" -or -iname "ace" -type d`
-pushd $ACE_PKG_DIR
-  sed -i.bak "s/CC=/CC?=/g" Makefile.in
-popd
-
-for pkg in DeepThought nq simpcomp; do
-  VERSION_PKG_DIR=`find . -maxdepth 1 -iname "$pkg-*" -or -iname "$pkg" -type d`
-  pushd $VERSION_PKG_DIR
-    if [[ "$target_platform" == osx-* ]]; then
-      mv VERSION .VERSION || true
-      sed -i.bak "s/< VERSION/< .VERSION/g" configure.ac || true
-      sed -i.bak "s@$(top_srcdir)/VERSION@$(top_srcdir)/.VERSION@g" || true
-      autoreconf -vfi
-    fi
-  popd
-done
+rm -rf xgap
 
-sed -i.bak "s@./build-normaliz.sh@echo@g" ../bin/BuildPackages.sh
 bash ../bin/BuildPackages.sh \
    --add-package-config-Semigroups "--with-external-libsemigroups --without-march-native" \
-   --add-package-config-Digraphs "--with-external-bliss --with-external-planarity --without-intrinsics"
+   --add-package-config-Digraphs "--with-external-bliss --with-external-planarity --without-intrinsics" \
 
 # Print error logs
 mkdir -p log

recipe/install-core.sh

@@ -1,9 +1,10 @@
+#!/bin/bash
+
 INSTALL_DIR="$PREFIX/share/gap"
 
 mkdir -p "$INSTALL_DIR"
 
-make install-headers install-libgap
-cp gen/config.h $PREFIX/include/gap
+make install
 
 set +e
 pushd pkg
@@ -22,24 +23,13 @@ popd
 echo "done"
 set -e
 
-cp -R * "$INSTALL_DIR"
-rm -rf "$INSTALL_DIR/obj"
-rm -rf "$INSTALL_DIR/pkg"
-rm "$INSTALL_DIR"/conda_build.sh
-cp "$RECIPE_DIR/gap.sh" "$PREFIX/bin/gap"
-chmod +x "$PREFIX/bin/gap"
-
-GAP_SRC_PATH=`ls -d "$INSTALL_DIR"/bin/*/src`
-rm "$GAP_SRC_PATH"
-ln -s "$INSTALL_DIR"/src/ "$GAP_SRC_PATH"
-
 mkdir -p "$INSTALL_DIR/pkg"
 cd pkg
 for GAP_PKG_NAME in smallgrp transgrp primgrp gapdoc;
 do
-    PKG_DIR=`find . -maxdepth 1 -iname "$GAP_PKG_NAME-*" -o -iname "$GAP_PKG_NAME" -type d`
     echo "GAP_PKG_NAME: $GAP_PKG_NAME"
-    echo "PKG_DIR: $PKG_DIR"
-    ls -al .
-    mv $PKG_DIR $INSTALL_DIR/pkg/$PKG_DIR
+    mv $GAP_PKG_NAME $INSTALL_DIR/pkg/$GAP_PKG_NAME
 done
+
+# Delete doc for agt (we do not ship docs and these contain broken symlinks.)
+rm -rf $INSTALL_DIR/pkg/agt/doc

recipe/install-defaults.sh

@@ -18,21 +18,23 @@ echo "done"
 set -e
 
 for pkg in atlasrep \
-    autpgrp-* \
-    alnuth-* \
-    crisp-* \
-    ctbllib-* \
-    FactInt-* \
+    autpgrp \
+    alnuth \
+    crisp \
+    ctbllib \
+    factint \
     fga \
-    irredsol-* \
-    laguna-* \
-    polenta-* \
-    polycyclic-* \
-    resclasses-* \
-    sophus-* \
-    tomlib-* ; do
+    irredsol \
+    laguna \
+    polenta \
+    polycyclic \
+    resclasses \
+    sophus \
+    tomlib ; do
     mv $pkg $INSTALL_DIR/pkg/$pkg
 done
 
 popd
 
+# Delete doc for agt (we do not ship docs and these contain broken symlinks.)
+rm -rf $INSTALL_DIR/pkg/agt/doc

recipe/install-full.sh

@@ -22,7 +22,7 @@ set -e
 
 mv pkg $INSTALL_DIR/pkg
 
-pushd $INSTALL_DIR/pkg/JupyterKernel-*/
+pushd $INSTALL_DIR/pkg/jupyterkernel/
 sed -i.bak "s@  GAP=gap@  GAP=$PREFIX/bin/gap@g" bin/jupyter-kernel-gap
 rm bin/jupyter-kernel-gap.bak
 rm setup.py
@@ -31,3 +31,6 @@ cp $RECIPE_DIR/gap-mode.json etc/
 python -m pip install . --no-deps
 rm -rf $SP_DIR/gap_jupyter-*
 popd
+
+# Delete doc for agt (we do not ship docs and these contain broken symlinks.)
+rm -rf $INSTALL_DIR/pkg/agt/doc

recipe/meta.yaml

@@ -1,4 +1,4 @@
-{% set version = "4.11.1" %}
+{% set version = "4.12.2" %}
 {% set name = "gap-split" %}
 
 package:
@@ -7,14 +7,14 @@ package:
 
 source:
   url: https://github.com/gap-system/gap/releases/download/v{{ version }}/gap-{{ version }}.tar.gz
-  sha256: 6635c5da7d82755f8339486b9cac33766f58712f297e8234fba40818902ea304
+  sha256: 672308745eb78a222494ee8dd6786edd5bc331456fcc6456ac064bdb28d587a8
   patches:
-    - 0000-cross-build-package.patch
-    # Upstream issue: https://github.com/gap-system/gap/issues/5383
-    - 0001-Use-a-standard-autotools-setup.patch
+    - patches/0001-Allow-cross-building-packages.patch
+    - patches/0001-Do-not-run-prerequisites.sh.patch
+    - patches/0001-Do-not-install-documentation.patch
 
 build:
-  number: 5
+  number: 0
   skip: true  # [win]
 
 requirements:
@@ -24,7 +24,6 @@ requirements:
     - make
     - pkg-config
     - curl
-    - autoconf
     - automake
     - libtool
   host:
@@ -77,7 +76,7 @@ outputs:
         - {{ pin_subpackage('gap-core', exact=True) }}
     test:
       commands:
-        - echo "TODO - test a package here"
+        - echo 'if LoadPackage("smallgrp") = fail then QUIT_GAP(1); else QUIT_GAP(0); fi;' | gap
 
   - name: gap
     script: install-full.sh
@@ -135,15 +134,15 @@ outputs:
         - {{ pin_subpackage('gap-defaults', exact=True) }}
     test:
       commands:
-        - echo "TODO - test a package here"
+        - echo 'if LoadPackage("alnuth") = fail then QUIT_GAP(1); else QUIT_GAP(0); fi;' | gap
 
 about:
   home: https://www.gap-system.org/
   license: GPL-2.0-or-later
   license_file: LICENSE
   summary: GAP - Groups, Algorithms, Programming, a System for Computational Discrete Algebra
   dev_url: https://github.com/gap-system/gap
-  doc_url: https://www.gap-system.org/Manuals/doc/ref/chap0.html
+  doc_url: https://docs.gap-system.org/doc/ref/chap0_mj.html
 
 extra:
   recipe-maintainers: