GitHub - chrisamiller/netChopScraper: Allows programmatic retrieval of peptide cleavage predictions from the NetChop server at http://www.cbs.dtu.dk/services/NetChop/

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Allows programmatic retrieval of peptide cleavage predictions from the NetChop server at http://www.cbs.dtu.dk/services/NetChop/

MIT license

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Name		Name	Last commit message	Last commit date
Latest commit History 3 Commits
tests		tests
LICENSE		LICENSE
README		README
netchopSubmit.pl		netchopSubmit.pl
parseNetChop.pl		parseNetChop.pl
tests.sh		tests.sh

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A perl script that allows submission of peptides (in fasta format) to the NetChop server at http://www.cbs.dtu.dk/services/NetChop/

Example workflow:
    perl netchopSubmit.pl mysequences.fa >output
    perl parseNetChop.pl output >results

To test the functionality, run:
    perl tests.sh