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  1. fishplot fishplot Public

    Create timecourse "fish plots" that show changes in the clonal architecture of tumors

    R 165 46

  2. copyCat copyCat Public

    a parallel R package for detecting copy-number alterations from short sequencing reads

    R 22 10

  3. commute-times commute-times Public

    calculate drive times from multiple locations and visualize them in google earth

    Ruby 4 1

  4. bioinfoSnippets bioinfoSnippets Public

    Short snippets of code useful for bioinformatics and genomics

    Perl 2 2

  5. RMEmod RMEmod Public

    A tool for discovering functional modules by identifying recurrent and mutually exclusive mutational patterns in tumors

    Ruby 1 2

  6. netChopScraper netChopScraper Public

    Allows programmatic retrieval of peptide cleavage predictions from the NetChop server at http://www.cbs.dtu.dk/services/NetChop/

    Perl