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possible built failures on Python 3.11? #18

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cbm755 opened this issue Oct 22, 2022 · 4 comments
Closed

possible built failures on Python 3.11? #18

cbm755 opened this issue Oct 22, 2022 · 4 comments

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@cbm755
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cbm755 commented Oct 22, 2022

Upcoming Fedora 37 has Python 3.11rc2 right now. I tried to install lapsolver with pip. There was no .whl (but maybe this is normal for pre-release, I'm not expert on Python packaging!).

Instead it tries to use the .tar.gz and fails:

pip install lapsolver
Defaulting to user installation because normal site-packages is not writeable
Collecting lapsolver
  Using cached lapsolver-1.1.0.tar.gz (261 kB)
  Preparing metadata (setup.py) ... done
Installing collected packages: lapsolver
  DEPRECATION: lapsolver is being installed using the legacy 'setup.py install' method, because it does not have a 'pyproject.toml' and the 'wheel' package is not installed. pip 23.1 will enforce this behaviour change. A possible replacement is to enable the '--use-pep517' option. Discussion can be found at https://github.com/pypa/pip/issues/8559
  Running setup.py install for lapsolver ... error
  error: subprocess-exited-with-error
  
  × Running setup.py install for lapsolver did not run successfully.
  │ exit code: 1
  ╰─> [312 lines of output]
      /usr/lib/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
        warnings.warn(
      WARNING: The wheel package is not available.
      running install
      /usr/lib/python3.11/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
        warnings.warn(
      running build
      running build_py
      creating build
      creating build/lib.linux-x86_64-cpython-311
      creating build/lib.linux-x86_64-cpython-311/lapsolver
      copying lapsolver/__init__.py -> build/lib.linux-x86_64-cpython-311/lapsolver
      creating build/lib.linux-x86_64-cpython-311/lapsolver/tests
      copying lapsolver/tests/__init__.py -> build/lib.linux-x86_64-cpython-311/lapsolver/tests
      copying lapsolver/tests/test_files.py -> build/lib.linux-x86_64-cpython-311/lapsolver/tests
      copying lapsolver/tests/test_dense.py -> build/lib.linux-x86_64-cpython-311/lapsolver/tests
      running egg_info
      writing lapsolver.egg-info/PKG-INFO
      writing dependency_links to lapsolver.egg-info/dependency_links.txt
      writing top-level names to lapsolver.egg-info/top_level.txt
      reading manifest file 'lapsolver.egg-info/SOURCES.txt'
      reading manifest template 'MANIFEST.in'
      adding license file 'LICENSE'
      writing manifest file 'lapsolver.egg-info/SOURCES.txt'
      /usr/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     Installing 'lapsolver.data.dense' as data is deprecated, please list it in `packages`.
          !!
      
      
          ############################
          # Package would be ignored #
          ############################
          Python recognizes 'lapsolver.data.dense' as an importable package,
          but it is not listed in the `packages` configuration of setuptools.
      
          'lapsolver.data.dense' has been automatically added to the distribution only
          because it may contain data files, but this behavior is likely to change
          in future versions of setuptools (and therefore is considered deprecated).
      
          Please make sure that 'lapsolver.data.dense' is included as a package by using
          the `packages` configuration field or the proper discovery methods
          (for example by using `find_namespace_packages(...)`/`find_namespace:`
          instead of `find_packages(...)`/`find:`).
      
          You can read more about "package discovery" and "data files" on setuptools
          documentation page.
      
      
      !!
      
        check.warn(importable)
      /usr/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     Installing 'lapsolver.etc' as data is deprecated, please list it in `packages`.
          !!
      
      
          ############################
          # Package would be ignored #
          ############################
          Python recognizes 'lapsolver.etc' as an importable package,
          but it is not listed in the `packages` configuration of setuptools.
      
          'lapsolver.etc' has been automatically added to the distribution only
          because it may contain data files, but this behavior is likely to change
          in future versions of setuptools (and therefore is considered deprecated).
      
          Please make sure that 'lapsolver.etc' is included as a package by using
          the `packages` configuration field or the proper discovery methods
          (for example by using `find_namespace_packages(...)`/`find_namespace:`
          instead of `find_packages(...)`/`find:`).
      
          You can read more about "package discovery" and "data files" on setuptools
          documentation page.
      
      
      !!
      
        check.warn(importable)
      creating build/lib.linux-x86_64-cpython-311/lapsolver/data
      creating build/lib.linux-x86_64-cpython-311/lapsolver/data/dense
      copying lapsolver/data/dense/costs0.npz -> build/lib.linux-x86_64-cpython-311/lapsolver/data/dense
      copying lapsolver/data/dense/costs1.npz -> build/lib.linux-x86_64-cpython-311/lapsolver/data/dense
      copying lapsolver/data/dense/costs10.npz -> build/lib.linux-x86_64-cpython-311/lapsolver/data/dense
      copying lapsolver/data/dense/costs2.npz -> build/lib.linux-x86_64-cpython-311/lapsolver/data/dense
      copying lapsolver/data/dense/costs3.npz -> build/lib.linux-x86_64-cpython-311/lapsolver/data/dense
      copying lapsolver/data/dense/costs4.npz -> build/lib.linux-x86_64-cpython-311/lapsolver/data/dense
      copying lapsolver/data/dense/costs5.npz -> build/lib.linux-x86_64-cpython-311/lapsolver/data/dense
      copying lapsolver/data/dense/costs6.npz -> build/lib.linux-x86_64-cpython-311/lapsolver/data/dense
      copying lapsolver/data/dense/costs7.npz -> build/lib.linux-x86_64-cpython-311/lapsolver/data/dense
      copying lapsolver/data/dense/costs8.npz -> build/lib.linux-x86_64-cpython-311/lapsolver/data/dense
      copying lapsolver/data/dense/costs9.npz -> build/lib.linux-x86_64-cpython-311/lapsolver/data/dense
      creating build/lib.linux-x86_64-cpython-311/lapsolver/etc
      copying lapsolver/etc/benchmark-dtype-int.png -> build/lib.linux-x86_64-cpython-311/lapsolver/etc
      copying lapsolver/etc/benchmark-dtype-numpy.float32.png -> build/lib.linux-x86_64-cpython-311/lapsolver/etc
      running build_ext
      -- The C compiler identification is GNU 12.2.1
      -- The CXX compiler identification is GNU 12.2.1
      -- Detecting C compiler ABI info
      -- Detecting C compiler ABI info - done
      -- Check for working C compiler: /usr/bin/cc - skipped
      -- Detecting C compile features
      -- Detecting C compile features - done
      -- Detecting CXX compiler ABI info
      -- Detecting CXX compiler ABI info - done
      -- Check for working CXX compiler: /usr/bin/c++ - skipped
      -- Detecting CXX compile features
      -- Detecting CXX compile features - done
      -- Found PythonInterp: /usr/bin/python3 (found version "3.11")
      -- Found PythonLibs: /usr/lib64/libpython3.11.so
      -- Performing Test HAS_CPP14_FLAG
      -- Performing Test HAS_CPP14_FLAG - Success
      -- pybind11 v2.2.1
      -- Performing Test HAS_FLTO
      -- Performing Test HAS_FLTO - Success
      -- LTO enabled
      -- Configuring done
      -- Generating done
      -- Build files have been written to: /tmp/pip-install-ekbfrdjj/lapsolver_e4dd55aaded347cd9b2fabba1cf0d339/build/temp.linux-x86_64-cpython-311
      [ 50%] Building CXX object CMakeFiles/lapsolverc.dir/src/lapsolverc.cpp.o
      In file included from /tmp/pip-install-ekbfrdjj/lapsolver_e4dd55aaded347cd9b2fabba1cf0d339/pybind11/include/pybind11/cast.h:16,
                       from /tmp/pip-install-ekbfrdjj/lapsolver_e4dd55aaded347cd9b2fabba1cf0d339/pybind11/include/pybind11/attr.h:13,
                       from /tmp/pip-install-ekbfrdjj/lapsolver_e4dd55aaded347cd9b2fabba1cf0d339/pybind11/include/pybind11/pybind11.h:43,
                       from /tmp/pip-install-ekbfrdjj/lapsolver_e4dd55aaded347cd9b2fabba1cf0d339/src/lapsolverc.cpp:1:
      /tmp/pip-install-ekbfrdjj/lapsolver_e4dd55aaded347cd9b2fabba1cf0d339/pybind11/include/pybind11/detail/internals.h:82:33: warning: ‘int PyThread_create_key()’ is deprecated [-Wdeprecated-declarations]
         82 |     decltype(PyThread_create_key()) tstate = 0; // Usually an int but a long on Cygwin64 with Python 3.x
            |              ~~~~~~~~~~~~~~~~~~~^~
      In file included from /usr/include/python3.11/Python.h:89,
                       from /tmp/pip-install-ekbfrdjj/lapsolver_e4dd55aaded347cd9b2fabba1cf0d339/pybind11/include/pybind11/detail/common.h:111,
                       from /tmp/pip-install-ekbfrdjj/lapsolver_e4dd55aaded347cd9b2fabba1cf0d339/pybind11/include/pybind11/pytypes.h:12,
                       from /tmp/pip-install-ekbfrdjj/lapsolver_e4dd55aaded347cd9b2fabba1cf0d339/pybind11/include/pybind11/cast.h:13:
      /usr/include/python3.11/pythread.h:96:36: note: declared here
         96 | Py_DEPRECATED(3.7) PyAPI_FUNC(int) PyThread_create_key(void);
            |                                    ^~~~~~~~~~~~~~~~~~~
      /tmp/pip-install-ekbfrdjj/lapsolver_e4dd55aaded347cd9b2fabba1cf0d339/pybind11/include/pybind11/detail/internals.h:82:33: warning: ‘int PyThread_create_key()’ is deprecated [-Wdeprecated-declarations]
         82 |     decltype(PyThread_create_key()) tstate = 0; // Usually an int but a long on Cygwin64 with Python 3.x
            |              ~~~~~~~~~~~~~~~~~~~^~
      /usr/include/python3.11/pythread.h:96:36: note: declared here
         96 | Py_DEPRECATED(3.7) PyAPI_FUNC(int) PyThread_create_key(void);
            |                                    ^~~~~~~~~~~~~~~~~~~
      /tmp/pip-install-ekbfrdjj/lapsolver_e4dd55aaded347cd9b2fabba1cf0d339/pybind11/include/pybind11/detail/internals.h: In function ‘pybind11::detail::internals& pybind11::detail::get_internals()’:
      /tmp/pip-install-ekbfrdjj/lapsolver_e4dd55aaded347cd9b2fabba1cf0d339/pybind11/include/pybind11/detail/internals.h:165:27: warning: ‘void PyEval_InitThreads()’ is deprecated [-Wdeprecated-declarations]
        165 |         PyEval_InitThreads();
            |         ~~~~~~~~~~~~~~~~~~^~
      In file included from /usr/include/python3.11/Python.h:95:
      /usr/include/python3.11/ceval.h:132:37: note: declared here
        132 | Py_DEPRECATED(3.9) PyAPI_FUNC(void) PyEval_InitThreads(void);
            |                                     ^~~~~~~~~~~~~~~~~~
      /tmp/pip-install-ekbfrdjj/lapsolver_e4dd55aaded347cd9b2fabba1cf0d339/pybind11/include/pybind11/detail/internals.h:167:52: warning: ‘int PyThread_create_key()’ is deprecated [-Wdeprecated-declarations]
        167 |         internals_ptr->tstate = PyThread_create_key();
            |                                 ~~~~~~~~~~~~~~~~~~~^~
      /usr/include/python3.11/pythread.h:96:36: note: declared here
         96 | Py_DEPRECATED(3.7) PyAPI_FUNC(int) PyThread_create_key(void);
            |                                    ^~~~~~~~~~~~~~~~~~~
      /tmp/pip-install-ekbfrdjj/lapsolver_e4dd55aaded347cd9b2fabba1cf0d339/pybind11/include/pybind11/detail/internals.h:168:31: warning: ‘int PyThread_set_key_value(int, void*)’ is deprecated [-Wdeprecated-declarations]
        168 |         PyThread_set_key_value(internals_ptr->tstate, tstate);
            |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      /usr/include/python3.11/pythread.h:98:36: note: declared here
         98 | Py_DEPRECATED(3.7) PyAPI_FUNC(int) PyThread_set_key_value(int key,
            |                                    ^~~~~~~~~~~~~~~~~~~~~~
      /tmp/pip-install-ekbfrdjj/lapsolver_e4dd55aaded347cd9b2fabba1cf0d339/pybind11/include/pybind11/cast.h: In function ‘std::string pybind11::detail::error_string()’:
      /tmp/pip-install-ekbfrdjj/lapsolver_e4dd55aaded347cd9b2fabba1cf0d339/pybind11/include/pybind11/cast.h:441:36: error: invalid use of incomplete type ‘PyFrameObject’ {aka ‘struct _frame’}
        441 |                 "  " + handle(frame->f_code->co_filename).cast<std::string>() +
            |                                    ^~
      In file included from /usr/include/python3.11/Python.h:42:
      /usr/include/python3.11/pytypedefs.h:22:16: note: forward declaration of ‘PyFrameObject’ {aka ‘struct _frame’}
         22 | typedef struct _frame PyFrameObject;
            |                ^~~~~~
      /tmp/pip-install-ekbfrdjj/lapsolver_e4dd55aaded347cd9b2fabba1cf0d339/pybind11/include/pybind11/cast.h:441:75: error: expected primary-expression before ‘>’ token
        441 |                 "  " + handle(frame->f_code->co_filename).cast<std::string>() +
            |                                                                           ^
      /tmp/pip-install-ekbfrdjj/lapsolver_e4dd55aaded347cd9b2fabba1cf0d339/pybind11/include/pybind11/cast.h:441:77: error: expected primary-expression before ‘)’ token
        441 |                 "  " + handle(frame->f_code->co_filename).cast<std::string>() +
            |                                                                             ^
      /tmp/pip-install-ekbfrdjj/lapsolver_e4dd55aaded347cd9b2fabba1cf0d339/pybind11/include/pybind11/cast.h:443:29: error: invalid use of incomplete type ‘PyFrameObject’ {aka ‘struct _frame’}
        443 |                 handle(frame->f_code->co_name).cast<std::string>() + "\n";
            |                             ^~
      /usr/include/python3.11/pytypedefs.h:22:16: note: forward declaration of ‘PyFrameObject’ {aka ‘struct _frame’}
         22 | typedef struct _frame PyFrameObject;
            |                ^~~~~~
      /tmp/pip-install-ekbfrdjj/lapsolver_e4dd55aaded347cd9b2fabba1cf0d339/pybind11/include/pybind11/cast.h:443:64: error: expected primary-expression before ‘>’ token
        443 |                 handle(frame->f_code->co_name).cast<std::string>() + "\n";
            |                                                                ^
      /tmp/pip-install-ekbfrdjj/lapsolver_e4dd55aaded347cd9b2fabba1cf0d339/pybind11/include/pybind11/cast.h:443:66: error: expected primary-expression before ‘)’ token
        443 |                 handle(frame->f_code->co_name).cast<std::string>() + "\n";
            |                                                                  ^
      /tmp/pip-install-ekbfrdjj/lapsolver_e4dd55aaded347cd9b2fabba1cf0d339/pybind11/include/pybind11/cast.h:444:26: error: invalid use of incomplete type ‘PyFrameObject’ {aka ‘struct _frame’}
        444 |             frame = frame->f_back;
            |                          ^~
      /usr/include/python3.11/pytypedefs.h:22:16: note: forward declaration of ‘PyFrameObject’ {aka ‘struct _frame’}
         22 | typedef struct _frame PyFrameObject;
            |                ^~~~~~
      /tmp/pip-install-ekbfrdjj/lapsolver_e4dd55aaded347cd9b2fabba1cf0d339/pybind11/include/pybind11/pybind11.h: In constructor ‘pybind11::gil_scoped_acquire::gil_scoped_acquire()’:
      /tmp/pip-install-ekbfrdjj/lapsolver_e4dd55aaded347cd9b2fabba1cf0d339/pybind11/include/pybind11/pybind11.h:1741:58: warning: ‘void* PyThread_get_key_value(int)’ is deprecated [-Wdeprecated-declarations]
       1741 |         tstate = (PyThreadState *) PyThread_get_key_value(internals.tstate);
            |                                    ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
      /usr/include/python3.11/pythread.h:100:39: note: declared here
        100 | Py_DEPRECATED(3.7) PyAPI_FUNC(void *) PyThread_get_key_value(int key);
            |                                       ^~~~~~~~~~~~~~~~~~~~~~
      /tmp/pip-install-ekbfrdjj/lapsolver_e4dd55aaded347cd9b2fabba1cf0d339/pybind11/include/pybind11/pybind11.h:1753:35: warning: ‘int PyThread_set_key_value(int, void*)’ is deprecated [-Wdeprecated-declarations]
       1753 |             PyThread_set_key_value(internals.tstate, tstate);
            |             ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
      /usr/include/python3.11/pythread.h:98:36: note: declared here
         98 | Py_DEPRECATED(3.7) PyAPI_FUNC(int) PyThread_set_key_value(int key,
            |                                    ^~~~~~~~~~~~~~~~~~~~~~
      /tmp/pip-install-ekbfrdjj/lapsolver_e4dd55aaded347cd9b2fabba1cf0d339/pybind11/include/pybind11/pybind11.h: In member function ‘void pybind11::gil_scoped_acquire::dec_ref()’:
      /tmp/pip-install-ekbfrdjj/lapsolver_e4dd55aaded347cd9b2fabba1cf0d339/pybind11/include/pybind11/pybind11.h:1792:38: warning: ‘void PyThread_delete_key_value(int)’ is deprecated [-Wdeprecated-declarations]
       1792 |             PyThread_delete_key_value(detail::get_internals().tstate);
            |             ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      /usr/include/python3.11/pythread.h:101:37: note: declared here
        101 | Py_DEPRECATED(3.7) PyAPI_FUNC(void) PyThread_delete_key_value(int key);
            |                                     ^~~~~~~~~~~~~~~~~~~~~~~~~
      /tmp/pip-install-ekbfrdjj/lapsolver_e4dd55aaded347cd9b2fabba1cf0d339/pybind11/include/pybind11/pybind11.h: In constructor ‘pybind11::gil_scoped_release::gil_scoped_release(bool)’:
      /tmp/pip-install-ekbfrdjj/lapsolver_e4dd55aaded347cd9b2fabba1cf0d339/pybind11/include/pybind11/pybind11.h:1820:39: warning: ‘int PyThread_set_key_value(int, void*)’ is deprecated [-Wdeprecated-declarations]
       1820 |                 PyThread_set_key_value(key, nullptr);
            |                 ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
      /usr/include/python3.11/pythread.h:98:36: note: declared here
         98 | Py_DEPRECATED(3.7) PyAPI_FUNC(int) PyThread_set_key_value(int key,
            |                                    ^~~~~~~~~~~~~~~~~~~~~~
      /tmp/pip-install-ekbfrdjj/lapsolver_e4dd55aaded347cd9b2fabba1cf0d339/pybind11/include/pybind11/pybind11.h: In destructor ‘pybind11::gil_scoped_release::~gil_scoped_release()’:
      /tmp/pip-install-ekbfrdjj/lapsolver_e4dd55aaded347cd9b2fabba1cf0d339/pybind11/include/pybind11/pybind11.h:1833:35: warning: ‘int PyThread_set_key_value(int, void*)’ is deprecated [-Wdeprecated-declarations]
       1833 |             PyThread_set_key_value(key, tstate);
            |             ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
      /usr/include/python3.11/pythread.h:98:36: note: declared here
         98 | Py_DEPRECATED(3.7) PyAPI_FUNC(int) PyThread_set_key_value(int key,
            |                                    ^~~~~~~~~~~~~~~~~~~~~~
      /tmp/pip-install-ekbfrdjj/lapsolver_e4dd55aaded347cd9b2fabba1cf0d339/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::function pybind11::get_type_overload(const void*, const detail::type_info*, const char*)’:
      /tmp/pip-install-ekbfrdjj/lapsolver_e4dd55aaded347cd9b2fabba1cf0d339/pybind11/include/pybind11/pybind11.h:1890:49: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘frame’; did you mean ‘cframe’?
       1890 |     PyFrameObject *frame = PyThreadState_Get()->frame;
            |                                                 ^~~~~
            |                                                 cframe
      /tmp/pip-install-ekbfrdjj/lapsolver_e4dd55aaded347cd9b2fabba1cf0d339/pybind11/include/pybind11/pybind11.h:1891:41: error: invalid use of incomplete type ‘PyFrameObject’ {aka ‘struct _frame’}
       1891 |     if (frame && (std::string) str(frame->f_code->co_name) == name &&
            |                                         ^~
      /usr/include/python3.11/pytypedefs.h:22:16: note: forward declaration of ‘PyFrameObject’ {aka ‘struct _frame’}
         22 | typedef struct _frame PyFrameObject;
            |                ^~~~~~
      /tmp/pip-install-ekbfrdjj/lapsolver_e4dd55aaded347cd9b2fabba1cf0d339/pybind11/include/pybind11/pybind11.h:1892:14: error: invalid use of incomplete type ‘PyFrameObject’ {aka ‘struct _frame’}
       1892 |         frame->f_code->co_argcount > 0) {
            |              ^~
      /usr/include/python3.11/pytypedefs.h:22:16: note: forward declaration of ‘PyFrameObject’ {aka ‘struct _frame’}
         22 | typedef struct _frame PyFrameObject;
            |                ^~~~~~
      /tmp/pip-install-ekbfrdjj/lapsolver_e4dd55aaded347cd9b2fabba1cf0d339/pybind11/include/pybind11/pybind11.h:1895:18: error: invalid use of incomplete type ‘PyFrameObject’ {aka ‘struct _frame’}
       1895 |             frame->f_locals, PyTuple_GET_ITEM(frame->f_code->co_varnames, 0));
            |                  ^~
      /usr/include/python3.11/pytypedefs.h:22:16: note: forward declaration of ‘PyFrameObject’ {aka ‘struct _frame’}
         22 | typedef struct _frame PyFrameObject;
            |                ^~~~~~
      In file included from /usr/include/python3.11/Python.h:38:
      /tmp/pip-install-ekbfrdjj/lapsolver_e4dd55aaded347cd9b2fabba1cf0d339/pybind11/include/pybind11/pybind11.h:1895:52: error: invalid use of incomplete type ‘PyFrameObject’ {aka ‘struct _frame’}
       1895 |             frame->f_locals, PyTuple_GET_ITEM(frame->f_code->co_varnames, 0));
            |                                                    ^~
      /usr/include/python3.11/pyport.h:24:38: note: in definition of macro ‘_Py_CAST’
         24 | #define _Py_CAST(type, expr) ((type)(expr))
            |                                      ^~~~
      /usr/include/python3.11/cpython/tupleobject.h:30:38: note: in expansion of macro ‘_PyTuple_CAST’
         30 | #define PyTuple_GET_ITEM(op, index) (_PyTuple_CAST(op)->ob_item[index])
            |                                      ^~~~~~~~~~~~~
      /tmp/pip-install-ekbfrdjj/lapsolver_e4dd55aaded347cd9b2fabba1cf0d339/pybind11/include/pybind11/pybind11.h:1895:30: note: in expansion of macro ‘PyTuple_GET_ITEM’
       1895 |             frame->f_locals, PyTuple_GET_ITEM(frame->f_code->co_varnames, 0));
            |                              ^~~~~~~~~~~~~~~~
      /usr/include/python3.11/pytypedefs.h:22:16: note: forward declaration of ‘PyFrameObject’ {aka ‘struct _frame’}
         22 | typedef struct _frame PyFrameObject;
            |                ^~~~~~
      gmake[2]: *** [CMakeFiles/lapsolverc.dir/build.make:76: CMakeFiles/lapsolverc.dir/src/lapsolverc.cpp.o] Error 1
      gmake[1]: *** [CMakeFiles/Makefile2:100: CMakeFiles/lapsolverc.dir/all] Error 2
      gmake: *** [Makefile:91: all] Error 2
      Traceback (most recent call last):
        File "<string>", line 2, in <module>
        File "<pip-setuptools-caller>", line 34, in <module>
        File "/tmp/pip-install-ekbfrdjj/lapsolver_e4dd55aaded347cd9b2fabba1cf0d339/setup.py", line 72, in <module>
          setup(
        File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 87, in setup
          return distutils.core.setup(**attrs)
                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
        File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 177, in setup
          return run_commands(dist)
                 ^^^^^^^^^^^^^^^^^^
        File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 193, in run_commands
          dist.run_commands()
        File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 968, in run_commands
          self.run_command(cmd)
        File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1229, in run_command
          super().run_command(command)
        File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 987, in run_command
          cmd_obj.run()
        File "/usr/lib/python3.11/site-packages/setuptools/command/install.py", line 68, in run
          return orig.install.run(self)
                 ^^^^^^^^^^^^^^^^^^^^^^
        File "/usr/lib/python3.11/site-packages/setuptools/_distutils/command/install.py", line 690, in run
          self.run_command('build')
        File "/usr/lib/python3.11/site-packages/setuptools/_distutils/cmd.py", line 317, in run_command
          self.distribution.run_command(command)
        File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1229, in run_command
          super().run_command(command)
        File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 987, in run_command
          cmd_obj.run()
        File "/usr/lib/python3.11/site-packages/setuptools/command/build.py", line 24, in run
          super().run()
        File "/usr/lib/python3.11/site-packages/setuptools/_distutils/command/build.py", line 131, in run
          self.run_command(cmd_name)
        File "/usr/lib/python3.11/site-packages/setuptools/_distutils/cmd.py", line 317, in run_command
          self.distribution.run_command(command)
        File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1229, in run_command
          super().run_command(command)
        File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 987, in run_command
          cmd_obj.run()
        File "/tmp/pip-install-ekbfrdjj/lapsolver_e4dd55aaded347cd9b2fabba1cf0d339/setup.py", line 33, in run
          self.build_extension(ext)
        File "/tmp/pip-install-ekbfrdjj/lapsolver_e4dd55aaded347cd9b2fabba1cf0d339/setup.py", line 58, in build_extension
          subprocess.check_call(['cmake', '--build', '.'] + build_args, cwd=self.build_temp)
        File "/usr/lib64/python3.11/subprocess.py", line 413, in check_call
          raise CalledProcessError(retcode, cmd)
      subprocess.CalledProcessError: Command '['cmake', '--build', '.', '--config', 'Release', '--', '-j2']' returned non-zero exit status 2.
      [end of output]
  
  note: This error originates from a subprocess, and is likely not a problem with pip.
error: legacy-install-failure

× Encountered error while trying to install package.
╰─> lapsolver

note: This is an issue with the package mentioned above, not pip.
hint: See above for output from the failure.
@cheind
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cheind commented Oct 23, 2022

thanks for the report. not sure what's happening here - but seems like an c++ issue (besides some warnings about incorrect setup files). I'll try to reproduce - but that may take some time

@cbm755
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cbm755 commented Oct 24, 2022

Is this helpful? sirfz/tesserocr#298 (comment) something to do with autogenerated code, waiting for "Cython to support Python 3.11"...

cbm755 added a commit to cbm755/py-lapsolver that referenced this issue Nov 13, 2022
@cbm755
Bump submodule for latest release of pybind11
df9df15 
I think this fixes building on Python 3.11.  Fixes cheind#18.
@cbm755 cbm755 mentioned this issue Nov 13, 2022
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@cbm755
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cbm755 commented Nov 19, 2022

In case folks find their way here, a quick fix to get your lapsolver dep working on Python 3.11 is:

pip install git+https://github.com/cbm755/py-lapsolver@pybind11_bump

(see #19 for details)

ziw-liu added a commit to mehta-lab/VisCy that referenced this issue Jun 16, 2023
@ziw-liu
remove 3.11 support due to lapsolver issue
a109cf9 
cheind/py-lapsolver#18
ziw-liu added a commit to mehta-lab/VisCy that referenced this issue Jun 16, 2023
@ziw-liu
Update CI and code QA (#12)
1ccdba9 
* remove outdated tests

* remove nose and add pytest

* remove unused import

* rename torch_unet to unet

* format

* linting

* remove gpu profiling script
this can be now acheived with the lightning profiler

* lint with ruff and format with black

* format tests

* sort import with ruff and update CI workflow

* remove duplicate event

* black v23.3.0

* format

* remove 3.11 support due to lapsolver issue
cheind/py-lapsolver#18

* remove tf metric script test

* run a minimal subset of pytests
@cheind
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cheind commented Nov 29, 2024

should be fixed with latest pybind11 version bump

@cheind cheind closed this as completed Nov 29, 2024
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Bump submodule for latest release of pybind11 cbm755/py-lapsolver
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@cheind @cbm755