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release 1.5.2
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cdanielmachado committed May 22, 2023
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4 changes: 3 additions & 1 deletion README.md
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Expand Up @@ -17,7 +17,9 @@ Can be easily installed using **pip**:
pip install carveme
```

Additionally, you must install diamond and CPLEX (please check the documentation for details).
Additionally, you must install:
- diamond (conda install -c bioconda diamond)
- IBM CPLEX or Gurobi solver (full versions with respective academic licenses)

### Credits and License

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2 changes: 1 addition & 1 deletion carveme/__init__.py
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from reframed import set_default_solver
from reframed.solvers.solver import default_parameters, Parameter

__version__ = '1.5.1'
__version__ = '1.5.2'

project_dir = os.path.abspath(os.path.dirname(__file__)) + '/'

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7 changes: 2 additions & 5 deletions docs/installation.rst
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Installation
============

**CarveMe** currently supports Python 3.6 and 3.7.
We recommend using the `Anaconda python
distribution <https://www.continuum.io/downloads>`_.

CarveMe can be easily installed using the **pip** package manager:

.. code-block:: console
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Additionally, you must manually install two external dependencies:

- diamond_ (conda install -c bioconda diamond)
- IBM CPLEX_ Optimizer
- either the IBM CPLEX_ Optimizer or the Gurobi_ Optimizer

.. _diamond: https://github.com/bbuchfink/diamond
.. _CPLEX: https://www.ibm.com/analytics/cplex-optimizer
.. _Gurobi: https://www.gurobi.com/downloads/gurobi-software/

Note that you will need to register with IBM to obtain an `academic license for CPLEX <https://www.ibm.com/academic/home>`_.

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7 changes: 5 additions & 2 deletions setup.py
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readme = readme_file.read()

requirements = [
"reframed>=1.2.1",
"reframed>=1.4.0",
"pandas>=1.0",
]

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setup(
name='carveme',
version='1.5.1',
version='1.5.2',
description="CarveMe: automated metabolic model reconstruction",
long_description=readme,
author="Daniel Machado",
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'Programming Language :: Python :: 3.6',
'Programming Language :: Python :: 3.7',
'Programming Language :: Python :: 3.8',
'Programming Language :: Python :: 3.9',
'Programming Language :: Python :: 3.10',
'Programming Language :: Python :: 3.11',
'License :: OSI Approved :: Apache Software License',
],
setup_requires=['setuptools_scm']
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