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update refseq and genbank files
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cdanielmachado committed Nov 9, 2017
1 parent 8461af1 commit 86e1ef8
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Showing 6 changed files with 4 additions and 4 deletions.
4 changes: 2 additions & 2 deletions carveme/config.cfg
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Expand Up @@ -9,8 +9,8 @@ unbalanced_metabolites = data/input/unbalanced_metabolites.csv
manually_curated = data/input/manually_curated.csv

[ncbi]
refseq = data/input/refseq_assembly_all.tsv.gz
genbank = data/input/genbank_assembly_all.tsv.gz
refseq = data/input/refseq_release_84.tsv.gz
genbank = data/input/genbank_release_221.tsv.gz

[generated]
folder = data/generated/
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4 changes: 2 additions & 2 deletions scripts/carveme_init
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Expand Up @@ -15,8 +15,8 @@ if __name__ == '__main__':
downloads = [
'data/input/bigg_proteins.faa',
'data/input/equilibrator_compounds.tsv.gz',
'data/input/refseq_assembly_all.tsv.gz',
'data/input/genbank_assembly_all.tsv.gz',
'data/input/refseq_release_84.tsv.gz',
'data/input/genbank_release_221.tsv.gz',
'data/generated/bigg_gprs.csv.gz',
'data/generated/model_specific_data.csv.gz',
'data/generated/universe_draft.xml.gz',
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