Parsing of sample name from BAM headers fails is sample at end of line #13

keiranmraine · 2017-05-16T12:21:23Z

Real files may have different RG field ordering, found examples which break.

Fix #13 problem with SN tag being at end of RG line. Update cgpPindel by pulling in new version of dockstore-cgpwxs

keiranmraine added the bug label May 16, 2017

keiranmraine closed this as completed in 166bdae May 26, 2017

keiranmraine added a commit that referenced this issue May 26, 2017

Merge tag '1.0.6' into develop

988597d

Fix #13 problem with SN tag being at end of RG line. Update cgpPindel by pulling in new version of dockstore-cgpwxs

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Parsing of sample name from BAM headers fails is sample at end of line #13

Parsing of sample name from BAM headers fails is sample at end of line #13

keiranmraine commented May 16, 2017

Parsing of sample name from BAM headers fails is sample at end of line #13

Parsing of sample name from BAM headers fails is sample at end of line #13

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keiranmraine commented May 16, 2017