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Issues: cancerit/dockstore-cgpwgs

17 Open 40 Closed
17 Open 40 Closed
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Issues list

Alignment is not BAM or CRAM file
#71 opened May 24, 2024 by daisyyr
4
qcGenotype archive for GRCh37 missing from wiki list
#70 opened Mar 23, 2023 by keiranmraine
CaVEMan WRAPPER_EXIT 25 on native docker
#69 opened Sep 21, 2022 by katlande
2
replicating brass results
#61 opened Jun 23, 2021 by anoronh4
Analysis completed with empty caveman snps.ids vcf
#60 opened Mar 9, 2021 by dawidsielski
switch to nproc from /proc/cpus
#58 opened Nov 30, 2020 by keiranmraine
Error in cgpFlagCaVEMan.pl: Can't use an undefined value as an ARRAY reference...
#57 opened Aug 11, 2020 by larsmew
1
--force option
#56 opened Jun 18, 2020 by seru71
7
resource consumption increase since 2.0.1
#51 opened May 19, 2020 by seru71
4
ds-cgpwgs.pl -sp not carried over to cgpFlagCaVEMan.pl -s
#50 opened Jan 21, 2020 by ym3
2
Missing parameters in example file for v2.1.0
#45 opened Nov 23, 2019 by ardydavari
20
dockstore registry page is broken
#42 opened Sep 30, 2019 by byb121
Cran keys
#40 opened Aug 13, 2019 by keiranmraine
missing run in example docker command: readme file
#34 opened Nov 6, 2018 by sb43
Frequent crashes at various steps of the workflow bug
#33 opened Sep 3, 2018 by suhrig
1
pindel vcf - SP/AS header mismatch bug
#27 opened May 15, 2018 by keiranmraine
ERROR: Use of uninitialized value $item in sprintf at /opt/wtsi-cgp/bin/ds-cgpwgs.pl line 255. bug
#26 opened May 14, 2018 by leiendeckerlu
2
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