Missing line continuation

cancerit · May 2, 2019 · 4808e74 · 4808e74
1 parent b3e9729
commit 4808e74
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/scripts/analysisWGS.sh b/scripts/analysisWGS.sh
@@ -341,7 +341,7 @@ do_parallel[CaVEMan]="caveman.pl \
  -c $SNVFLAG \
  -f $REF_BASE/caveman/flagging/flag.to.vcf.convert.ini \
  -e $CAVESPLIT \
- -o $OUTPUT_DIR/${PROTOCOL}_${NAME_MT}_vs_${NAME_WT}/caveman
+ -o $OUTPUT_DIR/${PROTOCOL}_${NAME_MT}_vs_${NAME_WT}/caveman \
  -k $NORM_CONTAM \
  -no-flagging"