(SV) turn back on checking variant info fields against header in SV v…

…cf writing (turned off temporarily long time ago but slipped attention after implementation stablized) (#5084)
broadinstitute · Aug 3, 2018 · 6456cc4 · 6456cc4
1 parent 1acffc1
commit 6456cc4
Showing 1 changed file with 0 additions and 2 deletions.
diff --git a/src/main/java/org/broadinstitute/hellbender/tools/spark/sv/utils/SVVCFWriter.java b/src/main/java/org/broadinstitute/hellbender/tools/spark/sv/utils/SVVCFWriter.java
@@ -114,8 +114,6 @@ private static VariantContextWriter getVariantContextWriter(final OutputStream o
         if (null != referenceSequenceDictionary) {
             vcWriterBuilder = vcWriterBuilder.setReferenceDictionary(referenceSequenceDictionary);
         }
-        // todo: remove this when things are solid?
-        vcWriterBuilder = vcWriterBuilder.setOption(Options.ALLOW_MISSING_FIELDS_IN_HEADER);
         for (final Options opt : new Options[]{}) {
             vcWriterBuilder = vcWriterBuilder.setOption(opt);
         }