add r packages duckdb, pak, arrow

brineylab · Sep 12, 2024 · 83bb3dd · 83bb3dd
1 parent 479105e
commit 83bb3dd
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diff --git a/.DS_Store b/.DS_Store
diff --git a/jupyterhub/datascience/Dockerfile b/jupyterhub/datascience/Dockerfile
@@ -146,7 +146,8 @@ RUN mamba install --yes --file ${REQUIREMENTS_DIR}/r_mamba.txt \
     && mamba clean --all -f -y \
     && fix-permissions "${CONDA_DIR}" \
     && fix-permissions "/home/${NB_USER}"
-
+RUN R -e "install.packages('duckdb', dependencies=TRUE, repos='http://cran.rstudio.com/')"
+RUN R -e "install.packages('pak', dependencies=TRUE, repos='http://cran.rstudio.com/')"
 
 #-----------------
 #     Rust

diff --git a/requirements/r_mamba.txt b/requirements/r_mamba.txt
@@ -1,3 +1,4 @@
+r-arrow
 r-base
 r-caret
 r-crayon
-Original file line number
+Diff line change
@@ -1,3 +1,4 @@
+    r-arrow
     r-base
     r-caret
     r-crayon
@@ Expand Down @@