Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Ingest BioPortal PURLs from prefixmaps #1099

Draft
wants to merge 7 commits into
base: main
Choose a base branch
from
Draft

Conversation

cthoyt
Copy link
Member

@cthoyt cthoyt commented Apr 18, 2024

This PR performs QC on the curated URI prefixes in https://github.com/linkml/prefixmaps/blob/main/src/prefixmaps/data/bioportal.curated.yaml and ingests a high-quality/non-redundant subset of them. This still requires curation to add in important context for each

Copy link

codecov bot commented Apr 18, 2024

Codecov Report

Attention: Patch coverage is 0% with 41 lines in your changes are missing coverage. Please review.

Project coverage is 40.26%. Comparing base (0b0f8b9) to head (bc538ba).
Report is 38 commits behind head on main.

❗ Current head bc538ba differs from pull request most recent head 4723eca. Consider uploading reports for the commit 4723eca to get more accurate results

Files Patch % Lines
...ioregistry/curation/ingest_prefixmaps_bioportal.py 0.00% 41 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main    #1099      +/-   ##
==========================================
- Coverage   40.44%   40.26%   -0.18%     
==========================================
  Files         150      151       +1     
  Lines        8340     8384      +44     
  Branches     1637     1650      +13     
==========================================
+ Hits         3373     3376       +3     
- Misses       4776     4817      +41     
  Partials      191      191              

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant