Update bioregistry.json

biopragmatics · Apr 22, 2024 · 4723eca · 4723eca
1 parent 4302077
commit 4723eca
Showing 1 changed file with 53 additions and 1 deletion.
diff --git a/src/bioregistry/data/bioregistry.json b/src/bioregistry/data/bioregistry.json
@@ -1014,6 +1014,15 @@
       "prefix": "ADO"
     },
     "pattern": "^\\d{7}$",
+    "providers": [
+      {
+        "code": "legacy",
+        "description": "Legacy URI used before switching to OBO PURLs",
+        "homepage": "http://scai.fraunhofer.de",
+        "name": "Legacy",
+        "uri_format": "http://scai.fraunhofer.de/AlzheimerOntology#$1"
+      }
+    ],
     "publications": [
       {
         "doi": "10.1016/j.jalz.2013.02.009",
@@ -4799,6 +4808,15 @@
       ],
       "uri_format": "http://www.whocc.no/atc_ddd_index/?code=$1"
     },
+    "providers": [
+      {
+        "code": "bioportal.purl",
+        "description": "BioPortal assigned additional PURLs for ATC codes",
+        "homepage": "http://purl.bioontology.org/ontology/ATC",
+        "name": "BioPortal",
+        "uri_format": "http://purl.bioontology.org/ontology/ATC/$1"
+      }
+    ],
     "publications": [
       {
         "pubmed": "7368387",
@@ -9539,6 +9557,15 @@
     },
     "name": "Biomedical Informatics Research Network Lexicon",
     "pattern": "^\\d+$",
+    "providers": [
+      {
+        "code": "bioportal.purl",
+        "description": "Pseudo-BioPortal PURL assigned to BirnLex",
+        "homepage": "http://bioontology.org/projects/ontologies/birnlex",
+        "name": "BioPortal",
+        "uri_format": "http://bioontology.org/projects/ontologies/birnlex#$1"
+      }
+    ],
     "uri_format": "http://uri.neuinfo.org/nif/nifstd/birnlex_$1"
   },
   "biro": {
@@ -26859,10 +26886,17 @@
     "providers": [
       {
         "code": "purl",
-        "description": "Legacy PURLs found in OAE",
+        "description": "Legacy PURLs for DOID, including the redundant DOID_",
         "homepage": "http://purl.org/obo/owl/",
         "name": "Legacy PURL",
         "uri_format": "http://purl.org/obo/owl/DOID#DOID_$1"
+      },
+      {
+        "code": "purl2",
+        "description": "Legacy PURLs for DOID, not including the redundant DOID_",
+        "homepage": "http://purl.org/obo/owl/",
+        "name": "Legacy PURL",
+        "uri_format": "http://purl.org/obo/owl/DOID#$1"
       }
     ],
     "publications": [
@@ -34809,6 +34843,15 @@
       "prefix": "EPIO"
     },
     "pattern": "^\\d{7}$",
+    "providers": [
+      {
+        "code": "legacy",
+        "description": "Legacy internal URL before switching to OBO PURL",
+        "homepage": "https://bio.scai.fraunhofer.de/ontolog",
+        "name": "Legacy",
+        "uri_format": "https://bio.scai.fraunhofer.de/ontology/epilepsy#$1"
+      }
+    ],
     "uri_format": "http://purl.obolibrary.org/obo/EPIO_$1"
   },
   "epo": {
@@ -42715,6 +42758,15 @@
       "fairsharing": "FAIRsharing.175hsz"
     },
     "name": "General Formal Ontology",
+    "providers": [
+      {
+        "code": "alt1",
+        "description": "Alternate identifier using gfo-basic.owl instead of gfo.owl",
+        "homepage": "http://www.onto-med.de/ontologies",
+        "name": "Alternate 1",
+        "uri_format": "http://www.onto-med.de/ontologies/gfo-basic.owl#$1"
+      }
+    ],
     "uri_format": "http://www.onto-med.de/ontologies/gfo.owl#$1"
   },
   "ghr": {