Add pephub prefix (#1194)

--------- Co-authored-by: Mufaddal Naguthanawala <[email protected]> Co-authored-by: Charles Tapley Hoyt <[email protected]> Co-authored-by: Ben Gyori <[email protected]>
biopragmatics · Oct 21, 2024 · 2eef10d · 2eef10d
1 parent 30431c7
commit 2eef10d
Showing 1 changed file with 41 additions and 0 deletions.
diff --git a/src/bioregistry/data/bioregistry.json b/src/bioregistry/data/bioregistry.json
@@ -86801,6 +86801,47 @@
       "orcid": "0000-0003-4423-4370"
     }
   },
+  "pephub": {
+    "contact": {
+      "email": "[email protected]",
+      "github": "nsheff",
+      "name": "Nathan Sheffield",
+      "orcid": "0000-0001-5643-4068"
+    },
+    "contributor": {
+      "email": "[email protected]",
+      "github": "nagutm",
+      "name": "Mufaddal Naguthanawala",
+      "orcid": "0009-0009-5240-7463"
+    },
+    "description": "PEPhub is a database, web interface, and API for sharing, retrieving, and validating sample metadata. PEPhub uses Portable Encapsulated Projects (PEP) biological metadata standard to store, edit, and access PEPs in one place.",
+    "example": "geo",
+    "example_extras": [
+      "geo/gse185244",
+      "bedbase/gse198944",
+      "databio/encode_batch_1"
+    ],
+    "github_request_issue": 1194,
+    "homepage": "https://pephub.databio.org/",
+    "name": "PEPhub",
+    "pattern": "^[A-Za-z0-9_\\-]+(/[A-Za-z0-9_\\-]+)?$",
+    "publications": [
+      {
+        "doi": "10.1093/gigascience/giae033",
+        "pmc": "PMC11238423",
+        "pubmed": "38991851",
+        "title": "PEPhub: a database, web interface, and API for editing, sharing, and validating biological sample metadata",
+        "year": 2024
+      }
+    ],
+    "reviewer": {
+      "email": "[email protected]",
+      "github": "bgyori",
+      "name": "Benjamin M. Gyori",
+      "orcid": "0000-0001-9439-5346"
+    },
+    "uri_format": "https://pephub.databio.org/$1"
+  },
   "peptideatlas": {
     "biocontext": {
       "prefix": "PEPTIDEATLAS"